ID A0A161RMV4_9BRAD Unreviewed; 785 AA.
AC A0A161RMV4;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Amino acid decarboxylase {ECO:0000313|EMBL:KZD24538.1};
GN ORFNames=A4A58_21965 {ECO:0000313|EMBL:KZD24538.1}, HB776_06635
GN {ECO:0000313|EMBL:QND70945.1}, HP556_11445
GN {ECO:0000313|EMBL:NUU41728.1};
OS Tardiphaga robiniae.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Tardiphaga.
OX NCBI_TaxID=943830 {ECO:0000313|EMBL:KZD24538.1, ECO:0000313|Proteomes:UP000076574};
RN [1] {ECO:0000313|EMBL:KZD24538.1, ECO:0000313|Proteomes:UP000076574}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Vaf07 {ECO:0000313|EMBL:KZD24538.1,
RC ECO:0000313|Proteomes:UP000076574};
RA Kopat V., Chirak E., Kimeklis A., Andronov E.;
RT "Microsymbionts genomes from the relict species Vavilovia formosa (Stev.)
RT Fed.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000515291}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=581 {ECO:0000313|Proteomes:UP000515291};
RX PubMed=32686981;
RA Safronova V., Guro P., Sazanova A., Kuznetsova I., Belimov A., Yakubov V.,
RA Chirak E., Afonin A., Gogolev Y., Andronov E., Tikhonovich I.;
RT "Rhizobial microsymbionts of the narrowly endemic Oxytropis species growing
RT in Kamchatka are characterized by significant genetic diversity and possess
RT a set of genes that are associated with T3SS and T6SS secretion systems and
RT can affect the development of symbiosis.";
RL Mol. Plant Microbe 33:1232-1241(2020).
RN [3] {ECO:0000313|EMBL:QND70945.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=581 {ECO:0000313|EMBL:QND70945.1};
RX PubMed=33272987;
RA Hatmaker E.A., Presle G., Cannon O., Guss A.M., Elkins J.G.;
RT "Complete genome sequences of four natural Pseudomonas isolates that
RT catabolize a wide range of aromatic compounds relevant to lignin
RT valorization.";
RL Mol. Plant Microbe Interact. 9:1232-1241(2020).
RN [4] {ECO:0000313|EMBL:NUU41728.1, ECO:0000313|Proteomes:UP000570860}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LMG 26467 {ECO:0000313|EMBL:NUU41728.1,
RC ECO:0000313|Proteomes:UP000570860};
RA Lemaire J.F., Inderbitzin P., Gregorio O.A., Collins S.B., Wespe N.,
RA Knight-Connoni V.;
RT "Genome Sequencing of Type Strains.";
RL Submitted (MAY-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
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DR EMBL; LVYV01000003; KZD24538.1; -; Genomic_DNA.
DR EMBL; JABMCJ010000079; NUU41728.1; -; Genomic_DNA.
DR EMBL; CP050292; QND70945.1; -; Genomic_DNA.
DR RefSeq; WP_068730849.1; NZ_LVYV01000003.1.
DR AlphaFoldDB; A0A161RMV4; -.
DR STRING; 943830.A4A58_21965; -.
DR KEGG; trb:HB776_06635; -.
DR OrthoDB; 9761189at2; -.
DR Proteomes; UP000076574; Unassembled WGS sequence.
DR Proteomes; UP000515291; Chromosome.
DR Proteomes; UP000570860; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1};
KW Reference proteome {ECO:0000313|Proteomes:UP000076574}.
FT DOMAIN 388..402
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 393
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 785 AA; 88596 MW; BBC1A9902DA953EB CRC64;
MDYFKRFNFL FAMPTFDADD LEGIRLNQIV DEIERSGFEV VKARKLEDAT IAVQTDAAIG
CMVVDWGKKG LEGKTAALIN LMRKRGLDFP IILLIRRKRF EDVPVEVLDF IDGYVFLSEE
TPPFIAKNLI SRLKQYAETL KTPFFGALVD YAEEGNQLWT CPGHNGGVFY SRSPIGRVFM
EHLGEAVFRD DLDNSVLDLG DLLTHEGPAL QAQKEAAQIF GAEKTYFVLN GTSTSNKVAL
SALVTDGDLV LFDRNNHKAA LHGALMISGG VPIYVPTTRN PWGLIGPMNW DALDEDALRE
RIRINPLVTD PEAWKRPRPF RVAVVEQCTY DGTIYSAEMI IARIGHLCDY ILFDEAWAGF
MKFHPLYAGR FAMGLKELGP DSPGIIATQS THKQLASFSQ ASQIHMKDRH IRGQKRRVEH
RRFNESFMQH ASTSPFYPLF ASLDVGAQMM KGRSGEVLWD DTIRLGIELR KKMRAVRREF
EEKETRAERR WFFEPFVPER VAIPDAASEG AVHNVPWESI GTDQLATNPA YWQLAPDAAW
HGFPGMEAGF TMTDPNKLTV LTPGFDRTTG GYAEHGIPAP VVAQFLRENR IVPEKNDLNS
LLFLLTPGVE ASKAGTLISG LVAFKKLHDD NALLEDVIPE FARRRPARYA GIRLRDLCGD
MHRFFREANV SELQTRQFSA DHLPEIAMSP HDAARCLVRN DVDYLPIDEI FGRVATTPFV
VYPPGIATIV PGERLTERSK PMIDYLRMFE TCFNTFPGFD VEIQGIYRKV DANGRIRLYT
YVVSE
//
