ID A0A161Y6D9_DAUCS Unreviewed; 491 AA.
AC A0A161Y6D9;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 22-FEB-2023, entry version 20.
DE RecName: Full=Chromo domain-containing protein {ECO:0000259|PROSITE:PS50013};
GN ORFNames=DCAR_025000 {ECO:0000313|EMBL:KZM87899.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM87899.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZM87899.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM87899.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM87899.1}.
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DR EMBL; LNRQ01000007; KZM87899.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A161Y6D9; -.
DR STRING; 79200.A0A161Y6D9; -.
DR EnsemblPlants; KZM87899; KZM87899; DCAR_025000.
DR Gramene; KZM87899; KZM87899; DCAR_025000.
DR Proteomes; UP000077755; Chromosome 7.
DR GO; GO:0031507; P:heterochromatin formation; IEA:InterPro.
DR CDD; cd00024; CD_CSD; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR017984; Chromo_dom_subgr.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR023779; Chromodomain_CS.
DR InterPro; IPR044251; LHP1-like.
DR PANTHER; PTHR47240; CHROMO DOMAIN-CONTAINING PROTEIN LHP1; 1.
DR PANTHER; PTHR47240:SF2; CHROMO DOMAIN-CONTAINING PROTEIN LHP1; 1.
DR Pfam; PF00385; Chromo; 1.
DR PRINTS; PR00504; CHROMODOMAIN.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR PROSITE; PS00598; CHROMO_1; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000077755}.
FT DOMAIN 63..122
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT REGION 1..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 118..157
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 206..231
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..55
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..221
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 491 AA; 53271 MW; E2D1A324156BCDE4 CRC64;
MNGDSTDAPP EQNGLSPEHA GDDRSIEKGG EVEKGRDQFA DLKIQQEGGE EEGLRPKLAE
GFYEIESVRR KRVRKGQVQY LIKWRGWPET ANTWEPYDNL AACYDVIEAF EDSLLSGKHR
SRKRKRRSTG LVPQAKKKPQ GNVASTSRAQ DAGNVKFDEG NYVIPSLDDQ NHEDGGKSKI
EDLNNNEAVE QGNENGSVVV PPQVEEKENH HEMDANRGDL RDAPFPSEGS SRLPVDVLDS
EASEEFCFAN RHQNLEGEGQ VKASAFQNGH QKVDGGVVKD SDLKNGQQKV DGEGVAQGVG
LENGHQGVDK EGIVQAGGTE NGHQGVDEER IVQAGGIENG HQMFDGEGII QAGDCGNEIQ
MVDGEGVDQG DSVEAGQQMV NGEAVVQAGG RLGSRKRKPS SVKRFNQEHS PCVTNYAAPD
LTTKNTRAGG IVTQNRDQNS VYRSNDLACQ SKIDDITDGS SITEIIKPIS FASSESVPGI
LVTFMAKRLV I
//
