ID A0A162AD21_DAUCS Unreviewed; 768 AA.
AC A0A162AD21;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 24-JAN-2024, entry version 19.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN ORFNames=DCAR_013206 {ECO:0000313|EMBL:KZM99432.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM99432.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZM99432.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM99432.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM99432.1}.
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DR EMBL; LNRQ01000004; KZM99432.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A162AD21; -.
DR STRING; 79200.A0A162AD21; -.
DR EnsemblPlants; KZM99432; KZM99432; DCAR_013206.
DR Gramene; KZM99432; KZM99432; DCAR_013206.
DR OMA; CTNIANV; -.
DR Proteomes; UP000077755; Chromosome 4.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:UniProtKB-EC.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF32; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL1-RELATED; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 2.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR PROSITE; PS51704; GP_PDE; 2.
PE 4: Predicted;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000077755};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..17
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 18..768
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5007831073"
FT DOMAIN 55..355
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 371..670
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT REGION 724..743
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 725..743
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 768 AA; 84611 MW; 090EB90E070DD756 CRC64;
MWKLLISFLY LAAFAAAQTS TKKPSPWQTL KASRFCKNNG GTVFWFEIET AGDAPLVIAN
GGFSGLFPHS SSIAYAFALQ TGLPNTILWC DVQLTSDGYG VCLPDLLLNN GSDTGDQFPN
KKKTYLINGN RTTGWFSVDF TLSELSKVSL IQGVYSRTFQ FDQNLFPVMT IQEVVKQVKP
PGLWLNIQHA AFFDQHKLNI RSFVLSTSRS SIVNYISSPE VNFLKSIVAR LKATPTKLVF
RFLGKKDIEP STNQTYDSLL KNLTFIKTFA SGILVPKTYI WPVDPKLNLQ PSTSVVIDAH
KEGLKIYASD FANDVPLAYD FSYDPVDEYL KFIDNDNFSV DGVLSDFPIT PSAAIDCYSH
MDKNDSSPAK PLIITHEGAS GDYPGCTDLA YKKAITDGAD ILDCPVQMTK DGLPFCLGSI
NLIDRTNAVQ AYSTLTMDIP ELNGAGIFSF NLTWKEIQDL KPQIFNPYAE EKLYRNQNNK
NKGNLMLLSD FLGLAYNATS ISGVVISIEE ASFLAKQGLS VTDAVLDALS TNDYDNQTIK
RVMIQSTNSA VLTKIKEKKN FEFVYEVDEV IRDALNSTML DIKKFADAVV IKKKSVFSRN
NIGFLIGTTD VVPKLKAFKL PVYVKLFQNE FFPQAWDFFS DARVELNSFV VGADIDGVIT
EFPRTANNYR RNRCLGLGTN TPPYMTPVEP GSLLTVVLPQ PPAQAPSPVL SDSNVLEPPL
PSVAVAPTTA NTTTPALPPT NPRNGQSKLV LSVLVANLPL LLAAILSL
//