ID A0A164SN84_DAUCS Unreviewed; 526 AA.
AC A0A164SN84;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=Katanin p80 subunit C-terminal domain-containing protein {ECO:0000259|Pfam:PF13925};
GN ORFNames=DCAR_023502 {ECO:0000313|EMBL:KZM86368.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM86368.1};
RN [1] {ECO:0000313|EMBL:KZM86368.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM86368.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM86368.1}.
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DR EMBL; LNRQ01000007; KZM86368.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A164SN84; -.
DR STRING; 79200.A0A164SN84; -.
DR EnsemblPlants; KZM86368; KZM86368; DCAR_023502.
DR Gramene; KZM86368; KZM86368; DCAR_023502.
DR Proteomes; UP000077755; Chromosome 7.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0005856; C:cytoskeleton; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0008017; F:microtubule binding; IEA:InterPro.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR028021; Katanin_C-terminal.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19845; KATANIN P80 SUBUNIT; 1.
DR PANTHER; PTHR19845:SF0; KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1; 1.
DR Pfam; PF13925; Katanin_con80; 1.
DR Pfam; PF00400; WD40; 4.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 4.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Cytoskeleton {ECO:0000256|ARBA:ARBA00023212};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000077755};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT TRANSMEM 388..408
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REPEAT 12..53
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 54..88
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 97..138
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 139..180
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT DOMAIN 445..525
FT /note="Katanin p80 subunit C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13925"
FT REGION 270..301
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 317..357
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 526 AA; 58233 MW; 8AB7F475B2468F6B CRC64;
MSQLTLHLCR SLSGHSSGID SVCFDSSEVF VAAGAASGTI KLWNLEEAKI VRTLPGHRSN
CISLDFHPFG EIFASGSSDT NLKIWDIRLK GGCIHTYKGH TRGVNAIRFT PDGRWVVSGG
EDNTVKLWDL TAGKLLHEFK SHEGQIQCID FHPNEYLLAT GSADKTVKFW DLETFEFIGS
AGPEATGVQC MTFNPDGKNL LCGLHESLKV FSWEPIRCHD TVDVGWSRLS DINVHEGKLL
GCSYNHSCVG VWVVDISCVE PYAIVNTPRS NSISGPKANL SRSVSQTENT AKTSTARQQN
SNLINKESKS FPYVTRAHRK DQDTSAMESQ RAATTRSLPT NWEKKDRSPG HKGFASSNLS
GAVSSVNTLP NVRLYENMQD FFLIDQHFPF LHLYVILGML AIIGISFLKS VALSFNFNIR
GTSLSTEKEM EPVNEEDTIS ALTEQHKKFV GSLQSRLAKL EMVQKYWERN DIKGAIGMTE
KMSDNAVLAD IVSILAEKPD IVTLDICTCV LPLLTSLLES EIDQYE
//
