ID A0A165XF51_DAUCS Unreviewed; 877 AA.
AC A0A165XF51;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=RNA polymerase sigma-70 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=DCAR_014530 {ECO:0000313|EMBL:KZM98108.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM98108.1};
RN [1] {ECO:0000313|EMBL:KZM98108.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM98108.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}. Mitochondrion
CC inner membrane {ECO:0000256|ARBA:ARBA00004448}; Multi-pass membrane
CC protein {ECO:0000256|ARBA:ARBA00004448}.
CC -!- SIMILARITY: Belongs to the mitochondrial carrier (TC 2.A.29) family.
CC {ECO:0000256|ARBA:ARBA00006375}.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM98108.1}.
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DR EMBL; LNRQ01000004; KZM98108.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A165XF51; -.
DR STRING; 79200.A0A165XF51; -.
DR EnsemblPlants; KZM98108; KZM98108; DCAR_014530.
DR Gramene; KZM98108; KZM98108; DCAR_014530.
DR Proteomes; UP000077755; Chromosome 4.
DR GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:1990542; P:mitochondrial transmembrane transport; IEA:InterPro.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.50.40.10; Mitochondrial carrier domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR018108; Mitochondrial_sb/sol_carrier.
DR InterPro; IPR023395; Mt_carrier_dom_sf.
DR InterPro; IPR045315; Mtm1-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR45760; FI19922P1-RELATED; 1.
DR PANTHER; PTHR45760:SF2; FI19922P1-RELATED; 1.
DR Pfam; PF00153; Mito_carr; 4.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF103506; Mitochondrial carrier; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS50920; SOLCAR; 3.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|PROSITE-
KW ProRule:PRU00282}; Reference proteome {ECO:0000313|Proteomes:UP000077755};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|PROSITE-
KW ProRule:PRU00282}.
FT REPEAT 10..144
FT /note="Solcar"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00282"
FT REPEAT 156..256
FT /note="Solcar"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00282"
FT REPEAT 269..357
FT /note="Solcar"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00282"
FT DOMAIN 643..709
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 727..789
FT /note="RNA polymerase sigma-70 region 3"
FT /evidence="ECO:0000259|Pfam:PF04539"
FT DOMAIN 812..865
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT REGION 475..500
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 877 AA; 98063 MW; 7E861C659E85D1F9 CRC64;
MGVSHSPDNL NFPERAFSAA GAAFLSAIIV NPLDVVKTRL QAQAAGVPYS HPLSNVTSRM
AVFGPNMMFT DLRCSPSCAR AGVHGTVSIC PPECFEYKGT LDVFYKIIRQ EGVARLWRGT
NASLALAVPT VGIYLPCYDI FRNYLEDFTS KNAPSITPYA PLLAGSLARS LACISCYPIE
LARTRMQAFK ETHHGKKPPG VLKTLFEVIS QVKSSNRLQS SSQSYRALWT GLGAQLARDV
PFSAICWGTL EPTRRTLLGM VGEESNVVSV LGANFSAGFV AGTLAAAATC PLDVAKTRRQ
IEKDPARALR MTTRQTLVEI WRDGGMKGLF TGVGPRVGRA GPSVGIVDCL SINFHFAKFG
MGVVTVSSSA ARTPLGSSTR LSKYSFPTKR TSISMFKTDK TKNKALVAPK DAVSSAIEKS
KGKRKILRQS KKPLERVQAF SVAEAPSCPL DLDYYEAAAK LENIYKLSPA PEVYDGQDED
HGAKTIRKRR KKKIEENEKK EDKRINNVVR SQKTGLRRMS LEKRIELKIN KEAEVQSAMR
RRKLTGENES EKINRLVREY SVSTDLVSLD WKKMKIPPVL SSSEHTWLFK LMQPMKAILL
VKDNLQNDLG REPTDGELAK ATGMNVVQLR KQIAIGKAAR SKLIKHNLRL ILFVMNKYFQ
EFTNGPKFQD LCQAGVKGLI TAIDRFEPKR RLRLSTYSLF WIRHTIIRSM TLASFTKVSF
GLESVRAEIQ KVKLQLMFEL HREPTEEEII EKVGISRERY NEVMRASKPV FSLHARHSVT
QEEFISGITD FEGAGGDKRR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE
IGGNLNISRE MVRKHEVKAF MKLKHPTRVD YLRRYIL
//
