ID A0A166A9C5_DAUCS Unreviewed; 877 AA.
AC A0A166A9C5;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 03-MAY-2023, entry version 25.
DE RecName: Full=MIF4G domain-containing protein {ECO:0000259|SMART:SM00543};
GN ORFNames=DCAR_009654 {ECO:0000313|EMBL:KZN00900.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN00900.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZN00900.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZN00900.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NCBP1 family.
CC {ECO:0000256|ARBA:ARBA00007413}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZN00900.1}.
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DR EMBL; LNRQ01000003; KZN00900.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A166A9C5; -.
DR STRING; 79200.A0A166A9C5; -.
DR EnsemblPlants; KZN00900; KZN00900; DCAR_009654.
DR Gramene; KZN00900; KZN00900; DCAR_009654.
DR OMA; CAAEGLM; -.
DR Proteomes; UP000077755; Chromosome 3.
DR GO; GO:0005845; C:mRNA cap binding complex; IEA:EnsemblPlants.
DR GO; GO:0005846; C:nuclear cap binding complex; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000339; F:RNA cap binding; IEA:EnsemblPlants.
DR GO; GO:1901527; P:abscisic acid-activated signaling pathway involved in stomatal movement; IEA:EnsemblPlants.
DR GO; GO:0000380; P:alternative mRNA splicing, via spliceosome; IEA:EnsemblPlants.
DR GO; GO:0051607; P:defense response to virus; IEA:EnsemblPlants.
DR GO; GO:0048574; P:long-day photoperiodism, flowering; IEA:EnsemblPlants.
DR GO; GO:0006406; P:mRNA export from nucleus; IEA:InterPro.
DR GO; GO:0031053; P:primary miRNA processing; IEA:EnsemblPlants.
DR GO; GO:0000394; P:RNA splicing, via endonucleolytic cleavage and ligation; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR027159; CBP80.
DR InterPro; IPR015172; MIF4G-like_typ-1.
DR InterPro; IPR015174; MIF4G-like_typ-2.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR PANTHER; PTHR12412; CAP BINDING PROTEIN; 1.
DR PANTHER; PTHR12412:SF2; NUCLEAR CAP-BINDING PROTEIN SUBUNIT 1; 1.
DR Pfam; PF02854; MIF4G; 1.
DR Pfam; PF09088; MIF4G_like; 2.
DR Pfam; PF09090; MIF4G_like_2; 1.
DR SMART; SM00543; MIF4G; 1.
DR SUPFAM; SSF48371; ARM repeat; 3.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000077755}.
FT DOMAIN 8..229
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT REGION 793..814
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 653..738
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 800..814
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 877 AA; 98869 MW; 98881872CC49A2C3 CRC64;
MSSWRTLILR IGEKCPEYGA TVDFRDHIEN CFGVLRRELD HIEADILKFL LECAEQLPHK
IPLYGTVVGL LNLENDGFVK KVVETIQINL QGALDDGNCS RIRILMRFLT VLMCCKVVQP
SALLVVFETL LSSAATIVDE EKGNPSWQAC ADFYITCILS CLPWGGSELI EQVPEEVERV
IVGIEAYLSI RRHGSSAGLS VFDDSDSTGK AHSEKDFLED LWGRIQDLSN NGWKLDSVPR
PHLQFEAQLV AGKSHDFGPV SCPELPDSPA ALSGIAFGKQ KHDAELKYPQ RIRRLNIFPA
SKTEDLQPID RFVVEEYLLD VLLFLNGCRK ECASYMVGLP VPFRYEYLMA ETIFSQLLLL
PQPPFKPVYY TLVIIDLCKA LPGAFPAVVA GAVRALFDKI ADLDMECRTR LILWFSHHFL
ACNITYSYEL RGPRLSSNFQ FIWPWEEWAY VLNLPKWAPK RVFVQEVLER EVRLSYWDKV
KQSIENAPAL EELLPPKGGP NLKYSVEDAD KTELAFSSEI KAMVKGRKMA REVIVWMDEN
VVPAHGSDVA LKVIVHTLLD IGSKSFTHLI TVLERYGQVI AKICPDQEKQ ILLIDEVNCF
WKNSTQMTAL TIDRMMGYRL ISNLAIVRWV FSPTNVELFH TSDRLWEILR NAINKTYHRI
SDLRKEITSL KRNVVSAEES VSKAQAELDA AEAKLMLVDG EPVVGENPVR MKRLKASAEK
AKEEEVSVRE TLEAKEALFA RALEEIEALF LSMYKSFSYV LTGRLHDAFG DKESHGSNHA
DGMTIDLEDS SAMDLDQENG GPKKSTSTGG RASSGYSVTE KEQWCLSTLG YVKAFSRQYA
SEIWPHIEKL QAEVSGEDAH PLFLKALYSG LGVPTEL
//
