ID A0A166HTH2_DAUCS Unreviewed; 498 AA.
AC A0A166HTH2;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE RecName: Full=Zinc finger CCCH domain-containing protein 18 {ECO:0008006|Google:ProtNLM};
GN ORFNames=DCAR_003030 {ECO:0000313|EMBL:KZN10374.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZN10374.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZN10374.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZN10374.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZN10374.1}.
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DR EMBL; LNRQ01000001; KZN10374.1; -; Genomic_DNA.
DR RefSeq; XP_017230576.1; XM_017375087.1.
DR AlphaFoldDB; A0A166HTH2; -.
DR STRING; 79200.A0A166HTH2; -.
DR EnsemblPlants; KZN10374; KZN10374; DCAR_003030.
DR GeneID; 108205226; -.
DR Gramene; KZN10374; KZN10374; DCAR_003030.
DR KEGG; dcr:108205226; -.
DR OMA; QYTRGIG; -.
DR OrthoDB; 3060898at2759; -.
DR Proteomes; UP000077755; Chromosome 1.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 2.30.30.1190; -; 1.
DR InterPro; IPR000467; G_patch_dom.
DR InterPro; IPR041367; Znf-CCCH_4.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR47650; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22; 1.
DR PANTHER; PTHR47650:SF2; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22; 1.
DR Pfam; PF01585; G-patch; 1.
DR Pfam; PF18044; zf-CCCH_4; 1.
DR SMART; SM00443; G_patch; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR PROSITE; PS50174; G_PATCH; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723};
KW Reference proteome {ECO:0000313|Proteomes:UP000077755};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}.
FT DOMAIN 144..171
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 297..343
FT /note="G-patch"
FT /evidence="ECO:0000259|PROSITE:PS50174"
FT ZN_FING 144..171
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 245..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 341..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 399..424
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 427..492
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 341..358
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 399..416
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 498 AA; 55733 MW; 30EC7F324A7EFD22 CRC64;
MATGEEEERV LEEQLEIQLH EHRDSLSAIS HALLSDPSNS ELLAVQEELV QASKDAEDGL
FHLKRARLLR ETDVALQGTK STIEDVMVES LDTPDLQAEP LKDPSYSIGS KCRFRHTDGR
WYNGVVIGLE ESDEAKVSFL TPTSENMLMC KFFQQQRCRF GSSCRLSHGI DVPIYSLKTY
RPTIWDQSMA GSSIWAVADS KAGIWRKAEL ELWDDKLSLA KVIFLDDGSS LKLGTESISL
SAYAQLSDEE DNSSSEHSDY SDYDEDNSEG LGFQENSTLQ RGIQTETAVF AKWENHTRGI
ASKMMASMGY SEGMGLGATG QGIVDPISVR VLPSKQSLDH ALESRENGEK NDNTEKKRSR
GGKRKRDKKF AAAARAAKEA EEPSPDVFSL INTQLAKHSE ALNGGRSGIN QQNKSSKKGN
NEDRRALVAY TDEVKELRMR IEKLEEMVTR NKKEKVVYEA AMRKLHETRK ALERVEAAHA
SASTALSSEE REKKWLKF
//
