ID A0A173KU16_9SPHN Unreviewed; 756 AA.
AC A0A173KU16;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411};
DE Flags: Precursor;
GN Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411};
GN ORFNames=EP837_00818 {ECO:0000313|EMBL:ANI77254.1};
OS Sphingobium sp. EP60837.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingobium.
OX NCBI_TaxID=1855519 {ECO:0000313|EMBL:ANI77254.1, ECO:0000313|Proteomes:UP000078304};
RN [1] {ECO:0000313|EMBL:ANI77254.1, ECO:0000313|Proteomes:UP000078304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=EP60837 {ECO:0000313|EMBL:ANI77254.1,
RC ECO:0000313|Proteomes:UP000078304};
RA Lee C.-M., Yoon S.-H., Kim B.-Y.;
RT "Complete genome sequence of a organophosphorus pesticides.";
RL Submitted (JUN-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Involved in the assembly of lipopolysaccharide (LPS) at the
CC surface of the outer membrane. {ECO:0000256|HAMAP-Rule:MF_01411}.
CC -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC complex. {ECO:0000256|HAMAP-Rule:MF_01411}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|HAMAP-Rule:MF_01411}.
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DR EMBL; CP015986; ANI77254.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A173KU16; -.
DR STRING; 1855519.EP837_00818; -.
DR KEGG; sphb:EP837_00818; -.
DR PATRIC; fig|1855519.3.peg.830; -.
DR Proteomes; UP000078304; Chromosome 1.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR Gene3D; 2.60.450.10; Lipopolysaccharide (LPS) transport protein A like domain; 1.
DR HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR InterPro; IPR020889; LipoPS_assembly_LptD.
DR InterPro; IPR007543; LptD_C.
DR InterPro; IPR005653; OstA-like_N.
DR PANTHER; PTHR30189; LPS-ASSEMBLY PROTEIN; 1.
DR PANTHER; PTHR30189:SF1; LPS-ASSEMBLY PROTEIN LPTD; 1.
DR Pfam; PF04453; LptD; 1.
DR Pfam; PF03968; LptD_N; 1.
PE 3: Inferred from homology;
KW Cell outer membrane {ECO:0000256|HAMAP-Rule:MF_01411};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_01411};
KW Reference proteome {ECO:0000313|Proteomes:UP000078304};
KW Signal {ECO:0000256|HAMAP-Rule:MF_01411}.
FT SIGNAL 1..31
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT CHAIN 32..756
FT /note="LPS-assembly protein LptD"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT /id="PRO_5009001755"
FT DOMAIN 59..101
FT /note="Organic solvent tolerance-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF03968"
FT DOMAIN 316..683
FT /note="LptD C-terminal"
FT /evidence="ECO:0000259|Pfam:PF04453"
SQ SEQUENCE 756 AA; 83326 MW; 68D458B65E79C263 CRC64;
MQIFTRSAHL KHMLAAGVAL VCMGAMPYAA AQDLQQPPAP VSTPDAPVPA SDEQIGFAAD
SLEYDSNTEI VTASGNVQLL RQGNRLRADK VVWNRTTGQV EARGNVSATD PEGNIAYGDR
FQVTDTLKDG TVENMLLVLQ SGGRLAAAQG VRVNGVYTLH KAAYTGCKVE DSHGCPKEPT
WQIKAVKVVY DPVAARVKYR NANIELFGLP LIPLPGFSHP VGDTGGSGLL VPNLRYDRTN
GLEVALPYYL KLAPNRDLTI TPHIYSETLP MLEANFRHRW DRGAYQITGY ATHASRSAAS
STLPGSTTPA GTEKDFRGYI DASGGMQLTP EWSINGSIRV ASDRTFLRRY DISRDDRLRS
TLGAQRIGEN SYFSIAGWAV QTLRSGDPQG QTPIALPVID YRLRLLDPLL GGRIQLQANS
LAITRTDGQD TQRAFAAFEW NLRKLTGMGQ EVNFTTYLRG DVYHSSDNLL NNIPRYAGDP
GWKARGIAAA AMDVRWPFIG EAFGGVQRIA PRVQIVAAPR LANLSVPNED ARAIDLEDSN
LFALNRFAGY DRFEDSSRIT YGLEYNLSLP GFSLDTVVGQ SYRLDNRESI LPDGTGLSDR
MSDIVGRTTV RYKDFISLIH RFRLDKDGLS VRRNEVDATI GSRKTYAMVG YLRLNRNAAT
GLEDLQDREE LRLGGRVQFA RFWSVFGSTV VDLTDGKEDP LSVADGYEPV RHRLGVAYED
DCLTLGLTWR RDYLAAGDAR KGNSFQLRLA FRNIGI
//
