ID A0A173ZTQ9_9ACTN Unreviewed; 124 AA.
AC A0A173ZTQ9;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=Small ribosomal subunit protein uS13 {ECO:0000256|ARBA:ARBA00035166, ECO:0000256|HAMAP-Rule:MF_01315};
GN Name=rpsM {ECO:0000256|HAMAP-Rule:MF_01315,
GN ECO:0000313|EMBL:CUN79397.1};
GN ORFNames=AOBCEHNH_00288 {ECO:0000313|EMBL:VWL63587.1}, CKJAJONC_01621
GN {ECO:0000313|EMBL:VWL92746.1}, CSV91_04975
GN {ECO:0000313|EMBL:ATP53944.1}, CV096_02910
GN {ECO:0000313|EMBL:AZH69238.1}, ERS852381_01776
GN {ECO:0000313|EMBL:CUO53244.1}, ERS852399_01335
GN {ECO:0000313|EMBL:CUN79397.1}, ERS852514_01455
GN {ECO:0000313|EMBL:CUP22974.1}, GT464_02930
GN {ECO:0000313|EMBL:MZJ38912.1}, GT569_05695
GN {ECO:0000313|EMBL:MZJ41407.1}, GT634_04360
GN {ECO:0000313|EMBL:MZJ60904.1}, GT635_09475
GN {ECO:0000313|EMBL:MZJ86673.1}, GT640_07725
GN {ECO:0000313|EMBL:MZI14345.1}, KCJAJFAP_00536
GN {ECO:0000313|EMBL:VWL99275.1}, LMKDKBCB_00803
GN {ECO:0000313|EMBL:VWM05631.1}, NCTC11838_01629
GN {ECO:0000313|EMBL:SUY69387.1};
OS Collinsella aerofaciens.
OC Bacteria; Actinomycetota; Coriobacteriia; Coriobacteriales;
OC Coriobacteriaceae; Collinsella.
OX NCBI_TaxID=74426 {ECO:0000313|EMBL:CUN79397.1, ECO:0000313|Proteomes:UP000095441};
RN [1] {ECO:0000313|Proteomes:UP000095441, ECO:0000313|Proteomes:UP000095454}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2789STDY5608823 {ECO:0000313|EMBL:CUO53244.1,
RC ECO:0000313|Proteomes:UP000095468}, 2789STDY5608842
RC {ECO:0000313|EMBL:CUN79397.1, ECO:0000313|Proteomes:UP000095441}, and
RC 2789STDY5834902 {ECO:0000313|EMBL:CUP22974.1,
RC ECO:0000313|Proteomes:UP000095454};
RG Pathogen Informatics;
RL Submitted (SEP-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ATP53944.1, ECO:0000313|Proteomes:UP000225608}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=indica {ECO:0000313|Proteomes:UP000225608}, and Indica
RC {ECO:0000313|EMBL:ATP53944.1};
RA Bag S., Ghosh T.S., Das B.;
RT "Complete genome sequence of Collinsella aerofaciens isolated from the gut
RT of a healthy adult Indian.";
RL Submitted (OCT-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AZH69238.1, ECO:0000313|Proteomes:UP000282180}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C11 {ECO:0000313|EMBL:AZH69238.1,
RC ECO:0000313|Proteomes:UP000282180};
RA Nam Y.-D., Kang J., Chung W.-H.;
RT "Complete genome sequence of Collinsella aerofaciens C11.";
RL Submitted (NOV-2017) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:SUY69387.1, ECO:0000313|Proteomes:UP000254636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NCTC11838 {ECO:0000313|EMBL:SUY69387.1,
RC ECO:0000313|Proteomes:UP000254636};
RG Pathogen Informatics;
RA Doyle S.;
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Proteomes:UP000467404, ECO:0000313|Proteomes:UP000469094}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BIOML-A10 {ECO:0000313|EMBL:MZJ86673.1,
RC ECO:0000313|Proteomes:UP000481598}, BIOML-A14
RC {ECO:0000313|EMBL:MZJ41407.1, ECO:0000313|Proteomes:UP000469094},
RC BIOML-A2 {ECO:0000313|EMBL:MZI14345.1,
RC ECO:0000313|Proteomes:UP000471561}, BIOML-A20
RC {ECO:0000313|EMBL:MZJ38912.1, ECO:0000313|Proteomes:UP000469380}, and
RC BIOML-A8 {ECO:0000313|EMBL:MZJ60904.1,
RC ECO:0000313|Proteomes:UP000467404};
RX PubMed=31477907; DOI=.1038/s41591-019-0559-3;
RA Poyet M., Groussin M., Gibbons S.M., Avila-Pacheco J., Jiang X.,
RA Kearney S.M., Perrotta A.R., Berdy B., Zhao S., Lieberman T.D.,
RA Swanson P.K., Smith M., Roesemann S., Alexander J.E., Rich S.A., Livny J.,
RA Vlamakis H., Clish C., Bullock K., Deik A., Scott J., Pierce K.A.,
RA Xavier R.J., Alm E.J.;
RT "A library of human gut bacterial isolates paired with longitudinal
RT multiomics data enables mechanistic microbiome research.";
RL Nat. Med. 25:1442-1452(2019).
RN [6] {ECO:0000313|Proteomes:UP000330807, ECO:0000313|Proteomes:UP000361836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Collinsella_aerofaciens_AK_138A {ECO:0000313|EMBL:VWM05631.1},
RC Collinsella_aerofaciens_DSM_13712 {ECO:0000313|EMBL:VWL92746.1},
RC Collinsella_aerofaciens_MC1 {ECO:0000313|EMBL:VWL63587.1}, and
RC Collinsella_aerofaciens_MC2 {ECO:0000313|EMBL:VWL99275.1};
RA Wolf R A.;
RL Submitted (OCT-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Located at the top of the head of the 30S subunit, it
CC contacts several helices of the 16S rRNA. In the 70S ribosome it
CC contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit
CC (bridge B1b), connecting the 2 subunits; these bridges are implicated
CC in subunit movement. Contacts the tRNAs in the A and P-sites.
CC {ECO:0000256|HAMAP-Rule:MF_01315}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose heterodimer
CC with protein S19. Forms two bridges to the 50S subunit in the 70S
CC ribosome. {ECO:0000256|HAMAP-Rule:MF_01315}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS13 family.
CC {ECO:0000256|ARBA:ARBA00008080, ECO:0000256|HAMAP-Rule:MF_01315,
CC ECO:0000256|RuleBase:RU003830}.
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DR EMBL; CP024160; ATP53944.1; -; Genomic_DNA.
DR EMBL; CP024960; AZH69238.1; -; Genomic_DNA.
DR EMBL; CYYF01000011; CUN79397.1; -; Genomic_DNA.
DR EMBL; CYYP01000019; CUO53244.1; -; Genomic_DNA.
DR EMBL; CZAQ01000026; CUP22974.1; -; Genomic_DNA.
DR EMBL; WWTJ01000023; MZI14345.1; -; Genomic_DNA.
DR EMBL; WWSR01000003; MZJ38912.1; -; Genomic_DNA.
DR EMBL; WWSX01000014; MZJ41407.1; -; Genomic_DNA.
DR EMBL; WWTD01000007; MZJ60904.1; -; Genomic_DNA.
DR EMBL; WWTB01000026; MZJ86673.1; -; Genomic_DNA.
DR EMBL; UFXC01000001; SUY69387.1; -; Genomic_DNA.
DR EMBL; CABVUS010000008; VWL63587.1; -; Genomic_DNA.
DR EMBL; CABWIF010000010; VWL92746.1; -; Genomic_DNA.
DR EMBL; CABWIE010000030; VWL99275.1; -; Genomic_DNA.
DR EMBL; CABWIH010000131; VWM05631.1; -; Genomic_DNA.
DR RefSeq; WP_022094275.1; NZ_WWTK01000021.1.
DR STRING; 74426.ERS852399_01335; -.
DR PaxDb; 74426-ERS852399_01335; -.
DR GeneID; 66616602; -.
DR KEGG; caer:CSV91_04975; -.
DR OrthoDB; 9803610at2; -.
DR Proteomes; UP000095441; Unassembled WGS sequence.
DR Proteomes; UP000095454; Unassembled WGS sequence.
DR Proteomes; UP000095468; Unassembled WGS sequence.
DR Proteomes; UP000225608; Chromosome.
DR Proteomes; UP000254636; Unassembled WGS sequence.
DR Proteomes; UP000282180; Chromosome.
DR Proteomes; UP000330807; Unassembled WGS sequence.
DR Proteomes; UP000361836; Unassembled WGS sequence.
DR Proteomes; UP000368032; Unassembled WGS sequence.
DR Proteomes; UP000377777; Unassembled WGS sequence.
DR Proteomes; UP000467404; Unassembled WGS sequence.
DR Proteomes; UP000469094; Unassembled WGS sequence.
DR Proteomes; UP000469380; Unassembled WGS sequence.
DR Proteomes; UP000471561; Unassembled WGS sequence.
DR Proteomes; UP000481598; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 1.10.8.50; -; 1.
DR Gene3D; 4.10.910.10; 30s ribosomal protein s13, domain 2; 1.
DR HAMAP; MF_01315; Ribosomal_S13_S18; 1.
DR InterPro; IPR027437; Rbsml_uS13_C.
DR InterPro; IPR001892; Ribosomal_uS13.
DR InterPro; IPR010979; Ribosomal_uS13-like_H2TH.
DR InterPro; IPR019980; Ribosomal_uS13_bac-type.
DR InterPro; IPR018269; Ribosomal_uS13_CS.
DR NCBIfam; TIGR03631; uS13_bact; 1.
DR PANTHER; PTHR10871; 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18; 1.
DR PANTHER; PTHR10871:SF1; 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL; 1.
DR Pfam; PF00416; Ribosomal_S13; 1.
DR PIRSF; PIRSF002134; Ribosomal_S13; 1.
DR SUPFAM; SSF46946; S13-like H2TH domain; 1.
DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1.
DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000095441};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01315}; tRNA-binding {ECO:0000256|HAMAP-Rule:MF_01315}.
FT REGION 92..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 93..124
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 124 AA; 14298 MW; 42DD310FB2BE80D2 CRC64;
MARINGVDLP REKRVEIGLT YIYGIGRTTA TKICVECNVN VDTRVKDLTE DEVNAIRDYI
DKNQIMVEGD LRRERNQNVK RLMDIGCNRG LRHRKGLPVR GQRTHTNART RKGPKRQIGA
KKKK
//
