ID A0A174FK59_9BACE Unreviewed; 182 AA.
AC A0A174FK59;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE SubName: Full=Putative sigma factor {ECO:0000313|EMBL:CUO49907.1};
DE SubName: Full=RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KAA5465417.1};
GN Name=rpoE_1 {ECO:0000313|EMBL:CUO49907.1};
GN ORFNames=DW190_06710 {ECO:0000313|EMBL:RHH92948.1}, DW794_14050
GN {ECO:0000313|EMBL:RHD46577.1}, DWY26_09545
GN {ECO:0000313|EMBL:RGR72081.1}, ERS852494_00034
GN {ECO:0000313|EMBL:CUO49907.1}, ERS852558_00075
GN {ECO:0000313|EMBL:CUP38265.1}, F2Y31_01045
GN {ECO:0000313|EMBL:KAA5503865.1}, F2Y35_17170
GN {ECO:0000313|EMBL:KAA5489217.1}, F2Y36_03655
GN {ECO:0000313|EMBL:KAA5465417.1}, F2Y39_14585
GN {ECO:0000313|EMBL:KAA5475173.1}, NXW23_03705
GN {ECO:0000313|EMBL:UVQ97487.1};
OS Bacteroides caccae.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
OC Bacteroides.
OX NCBI_TaxID=47678 {ECO:0000313|EMBL:CUO49907.1, ECO:0000313|Proteomes:UP000095657};
RN [1] {ECO:0000313|Proteomes:UP000095657, ECO:0000313|Proteomes:UP000095725}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2789STDY5834880 {ECO:0000313|EMBL:CUO49907.1,
RC ECO:0000313|Proteomes:UP000095657}, and 2789STDY5834946
RC {ECO:0000313|EMBL:CUP38265.1, ECO:0000313|Proteomes:UP000095725};
RG Pathogen Informatics;
RL Submitted (SEP-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000283512, ECO:0000313|Proteomes:UP000284205}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AF24-29LB {ECO:0000313|EMBL:RGR72081.1,
RC ECO:0000313|Proteomes:UP000284205}, AM16-49B
RC {ECO:0000313|EMBL:RHH92948.1, ECO:0000313|Proteomes:UP000283512}, and
RC AM31-16AC {ECO:0000313|EMBL:RHD46577.1,
RC ECO:0000313|Proteomes:UP000284689};
RA Zou Y., Xue W., Luo G.;
RT "A genome reference for cultivated species of the human gut microbiota.";
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000368418, ECO:0000313|Proteomes:UP000427825}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BIOML-A19 {ECO:0000313|EMBL:KAA5503865.1,
RC ECO:0000313|Proteomes:UP000368418}, BIOML-A21
RC {ECO:0000313|EMBL:KAA5489217.1, ECO:0000313|Proteomes:UP000491168},
RC BIOML-A25 {ECO:0000313|EMBL:KAA5475173.1,
RC ECO:0000313|Proteomes:UP000427825}, and BIOML-A31
RC {ECO:0000313|EMBL:KAA5465417.1, ECO:0000313|Proteomes:UP000475905};
RX PubMed=31477907; DOI=.1038/s41591-019-0559-3;
RA Poyet M., Groussin M., Gibbons S.M., Avila-Pacheco J., Jiang X.,
RA Kearney S.M., Perrotta A.R., Berdy B., Zhao S., Lieberman T.D.,
RA Swanson P.K., Smith M., Roesemann S., Alexander J.E., Rich S.A., Livny J.,
RA Vlamakis H., Clish C., Bullock K., Deik A., Scott J., Pierce K.A.,
RA Xavier R.J., Alm E.J.;
RT "A library of human gut bacterial isolates paired with longitudinal
RT multiomics data enables mechanistic microbiome research.";
RL Nat. Med. 25:1442-1452(2019).
RN [4] {ECO:0000313|EMBL:UVQ97487.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=BFG-474 {ECO:0000313|EMBL:UVQ97487.1};
RA Tisza M.J., Smith D., Dekker J.P.;
RT "Genome Sequencing of Bacteroides fragilis Group Isolates with Nanopore
RT Technology.";
RL Submitted (AUG-2022) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
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DR EMBL; CZAI01000001; CUO49907.1; -; Genomic_DNA.
DR EMBL; CZBL01000001; CUP38265.1; -; Genomic_DNA.
DR EMBL; VVYP01000003; KAA5465417.1; -; Genomic_DNA.
DR EMBL; VVYJ01000008; KAA5475173.1; -; Genomic_DNA.
DR EMBL; VVYF01000018; KAA5489217.1; -; Genomic_DNA.
DR EMBL; VVYD01000001; KAA5503865.1; -; Genomic_DNA.
DR EMBL; QRUO01000007; RGR72081.1; -; Genomic_DNA.
DR EMBL; QSJD01000022; RHD46577.1; -; Genomic_DNA.
DR EMBL; QRKD01000003; RHH92948.1; -; Genomic_DNA.
DR EMBL; CP103166; UVQ97487.1; -; Genomic_DNA.
DR RefSeq; WP_005676774.1; NZ_WQQZ01000004.1.
DR STRING; 47678.ERS852494_00034; -.
DR GeneID; 75112141; -.
DR KEGG; bcac:CGC64_03475; -.
DR Proteomes; UP000095657; Unassembled WGS sequence.
DR Proteomes; UP000095725; Unassembled WGS sequence.
DR Proteomes; UP000283512; Unassembled WGS sequence.
DR Proteomes; UP000284205; Unassembled WGS sequence.
DR Proteomes; UP000284689; Unassembled WGS sequence.
DR Proteomes; UP000368418; Unassembled WGS sequence.
DR Proteomes; UP000427825; Unassembled WGS sequence.
DR Proteomes; UP000475905; Unassembled WGS sequence.
DR Proteomes; UP000491168; Unassembled WGS sequence.
DR Proteomes; UP001060260; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR014327; RNA_pol_sigma70_bacteroid.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR000792; Tscrpt_reg_LuxR_C.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02985; Sig70_bacteroi1; 1.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133:SF46; ECF RNA POLYMERASE SIGMA FACTOR SIGG; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SMART; SM00421; HTH_LUXR; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000095657}.
FT DOMAIN 123..179
FT /note="HTH luxR-type"
FT /evidence="ECO:0000259|SMART:SM00421"
SQ SEQUENCE 182 AA; 21995 MW; 792A249315BA6DFB CRC64;
MISKELIRRF KNGDEDAFSF LYKHYWEKVY GFTRLYLVSS EDIAEVVQEV FIKLWEARHL
IDEEQPFEGF LFIITRNMIF NYSRKKLNYS FLKVTVLQAM EQEYEEENKL ELSDLKKYLS
VLISQLPPRQ QEIFRMSREQ NLTYKQIAEQ LSISEKTVEY HMGLALKYLR KNLYLLSLFL
SV
//
