ID A0A175YKL4_DAUCS Unreviewed; 397 AA.
AC A0A175YKL4;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE RecName: Full=5'-3' exonuclease domain-containing protein {ECO:0000259|SMART:SM00475};
GN ORFNames=DCAR_028442 {ECO:0000313|EMBL:KZM84264.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM84264.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZM84264.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM84264.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM84264.1}.
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DR EMBL; LNRQ01000008; KZM84264.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A175YKL4; -.
DR STRING; 79200.A0A175YKL4; -.
DR EnsemblPlants; KZM84264; KZM84264; DCAR_028442.
DR Gramene; KZM84264; KZM84264; DCAR_028442.
DR OMA; CQPNRKY; -.
DR Proteomes; UP000077755; Chromosome 8.
DR GO; GO:0017108; F:5'-flap endonuclease activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0033567; P:DNA replication, Okazaki fragment processing; IEA:InterPro.
DR CDD; cd09898; H3TH_53EXO; 1.
DR CDD; cd09859; PIN_53EXO; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR InterPro; IPR020046; 5-3_exonucl_a-hlix_arch_N.
DR InterPro; IPR002421; 5-3_exonuclease.
DR InterPro; IPR036279; 5-3_exonuclease_C_sf.
DR InterPro; IPR020045; DNA_polI_H3TH.
DR InterPro; IPR038969; FEN.
DR InterPro; IPR029060; PIN-like_dom_sf.
DR PANTHER; PTHR42646:SF2; DNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR42646; FLAP ENDONUCLEASE XNI; 1.
DR Pfam; PF01367; 5_3_exonuc; 1.
DR Pfam; PF02739; 5_3_exonuc_N; 1.
DR SMART; SM00475; 53EXOc; 1.
DR SUPFAM; SSF47807; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR SUPFAM; SSF88723; PIN domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000077755}.
FT DOMAIN 88..355
FT /note="5'-3' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00475"
SQ SEQUENCE 397 AA; 44087 MW; 38A159720D4A6171 CRC64;
MAWSCYTQAL LPAGFTRFMN CCCRRRRLGP PKFIFLPKGY CSVSNILNTK NLHGDAPPIS
STSLEATLLN YTQRQQDTSS VGMTSPNARV MLIDGTSVIY RAYYKLLAKL HHGHLTHADG
NGDWVLTIFT ALSLVVFDHD GIPYGHVPVS SKQSFVAKGL NFRHTLYPPY KSNRSPTPDT
VVQGLQYLKA SLKAMSVKVI EVPGVEADDV IGTLASRSVS DGYKVRVVSP DKDFFQILSP
SLRLLRIAPR GLEMTSFGIE DFAKKYGTLK PAQFVDIISL VGVDGIGNVH ALQLITKFGT
LENLLQNVDQ VEEERIRKAL ISNAEEAILS KNLALLRSDL PFYMVPFATT DLKFTKPEDN
GEKFTSLLTA ISAYAEGFSA DKVIRRALYL WKKLEKQ
//
