ID A0A175YLW4_DAUCS Unreviewed; 1171 AA.
AC A0A175YLW4;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE RecName: Full=DNA damage-binding protein 1 {ECO:0008006|Google:ProtNLM};
GN ORFNames=DCAR_027872 {ECO:0000313|EMBL:KZM84706.1};
OS Daucus carota subsp. sativus (Carrot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; Daucinae;
OC Daucus; Daucus sect. Daucus.
OX NCBI_TaxID=79200 {ECO:0000313|EMBL:KZM84706.1, ECO:0000313|Proteomes:UP000077755};
RN [1] {ECO:0000313|EMBL:KZM84706.1, ECO:0000313|Proteomes:UP000077755}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH1 {ECO:0000313|Proteomes:UP000077755};
RC TISSUE=Leaf {ECO:0000313|EMBL:KZM84706.1};
RX PubMed=27158781; DOI=10.1038/ng.3565;
RA Iorizzo M., Ellison S., Senalik D., Zeng P., Satapoomin P., Huang J.,
RA Bowman M., Iovene M., Sanseverino W., Cavagnaro P., Yildiz M.,
RA Macko-Podgorni A., Moranska E., Grzebelus E., Grzebelus D., Ashrafi H.,
RA Zheng Z., Cheng S., Spooner D., Van Deynze A., Simon P.;
RT "A high-quality carrot genome assembly provides new insights into
RT carotenoid accumulation and asterid genome evolution.";
RL Nat. Genet. 48:657-666(2016).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the DDB1 family.
CC {ECO:0000256|ARBA:ARBA00007453}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZM84706.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LNRQ01000008; KZM84706.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A175YLW4; -.
DR STRING; 79200.A0A175YLW4; -.
DR EnsemblPlants; KZM84706; KZM84706; DCAR_027872.
DR Gramene; KZM84706; KZM84706; DCAR_027872.
DR OMA; HQDFLMR; -.
DR Proteomes; UP000077755; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 1.10.150.910; -; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR InterPro; IPR004871; Cleavage/polyA-sp_fac_asu_C.
DR InterPro; IPR018846; Cleavage/polyA-sp_fac_asu_N.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR10644:SF3; DNA DAMAGE-BINDING PROTEIN 1; 1.
DR PANTHER; PTHR10644; DNA REPAIR/RNA PROCESSING CPSF FAMILY; 1.
DR Pfam; PF03178; CPSF_A; 1.
DR Pfam; PF10433; MMS1_N; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000077755}.
FT DOMAIN 76..537
FT /note="Cleavage/polyadenylation specificity factor A
FT subunit N-terminal"
FT /evidence="ECO:0000259|Pfam:PF10433"
FT DOMAIN 747..1058
FT /note="Cleavage/polyadenylation specificity factor A
FT subunit C-terminal"
FT /evidence="ECO:0000259|Pfam:PF03178"
SQ SEQUENCE 1171 AA; 130132 MW; 05E0CF1AB7469AA4 CRC64;
MSTYNYVVTA HKPTNVTHSC VGNFTSPQEL NLIIAKCTRI EIHLLTAQGL QPMLDVPIYG
RIATLELFRP HGETQDLLFI ATERYKFCVL QWDPEAGEVI TRAMGDVSDR IGRPTDNGQI
GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCPKPTIVVL
YQDNKDARHV KTYEVALKDK DFIEGPWSQN NLDNGADLLI PVPPPLCGVL IIGEETIVYC
SASAFKAIPI RPAITRSYGR VDADGSRYLL GDHNGLLHLL VITHEKEKVT GLKIELLGET
SIASTISYLD NAFVYVGSSY GDSQLIKLNL QPDAKGSYVE ALERYVNLGP IVDFCVVDLE
RQGQGQVVTC SGAFKDGSLR IVRNGIGINE QASVELQGIK GMWSLRSATD DPFDTFLVVS
FISETRILAM NIEDELEETE IEGFSSQVQT LFCHDAVYDQ LVQVTSSSVR LVSSTSRELR
NEWKAPPGYS VNVATANSTQ VLLAAGGGHL VYLEIGDGIL NEVKHAQLEY DVSCLDINPI
GGNSSYSSLA AVGMWTDISV RIFSLPDLNL VTKEHLGGEI IPRSVLLCTF EGISYLLCAL
GDGHLLNFLL NLTTGQLTDR KKVSLGTQPI TLRTFSSKST THVFAASDRP TVIYSSNKKL
LYSNVNLKEV SHMCPFNSAA FPDSLAIAKE GELTIGTIDD IQKLHIRSIP LGEHARRICH
QEQSRTFALC SVKYNQSSAE DTEMHIIRLL DDQTFEFISS YSLDQFEYGC SILSCSFSDD
NNVYYCVGTA YVMPEENEPS KGRILVFLVE DGKLQLVAEK ETKGAVYSLN AFNGKLLAAI
NQKIQLYKWM LRDDGTRELQ SECGHHGHIL ALYVQTRGDF IVVGDLMKSI SLLIYKHEEG
AIEERARDYN ANWMTAVEIL DDDIYLGAEN NFNLFTVRKN SEGATDEERS RLEVVGEYHL
GEFVNRFRHG SLVMRMPDSD VGQIPTCIFG TVNGVIGVVA SLPQDQYSFL DKLQSNLRKV
IKGVGGLSHE QWRSYSSEKK TADAKNFLDG DLIESFLDLS RSKMEEVSKA MTVPVEELMK
RVEELTRSVI YFVKHATSLH YCTLCERLNS KLIANSRGAD PMGPAQQRPS GEIHVIVAPC
LPAKPPLFSV VSNLKAPMAD WAYFNHRGDL C
//
