ID A0A194YR25_SORBI Unreviewed; 677 AA.
AC A0A194YR25;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=SET domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3004G218000 {ECO:0000313|EMBL:KXG30647.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG30647.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG30647.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000763; KXG30647.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A194YR25; -.
DR EnsemblPlants; KXG30647; KXG30647; SORBI_3004G218000.
DR Gramene; KXG30647; KXG30647; SORBI_3004G218000.
DR eggNOG; KOG1082; Eukaryota.
DR OrthoDB; 443713at2759; -.
DR Proteomes; UP000000768; Chromosome 4.
DR ExpressionAtlas; A0A194YR25; baseline and differential.
DR GO; GO:0005694; C:chromosome; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0042054; F:histone methyltransferase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd10538; SET_SETDB-like; 1.
DR Gene3D; 1.10.8.850; Histone-lysine N methyltransferase , C-terminal domain-like; 1.
DR Gene3D; 2.170.270.10; SET domain; 1.
DR InterPro; IPR007728; Pre-SET_dom.
DR InterPro; IPR001214; SET_dom.
DR InterPro; IPR046341; SET_dom_sf.
DR InterPro; IPR025776; SUVR4/1/2.
DR InterPro; IPR043017; WIYLD_dom_sf.
DR InterPro; IPR018848; WIYLD_domain.
DR PANTHER; PTHR46450; INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED; 1.
DR PANTHER; PTHR46450:SF8; OS02G0621100 PROTEIN; 1.
DR Pfam; PF05033; Pre-SET; 1.
DR Pfam; PF00856; SET; 1.
DR Pfam; PF10440; WIYLD; 1.
DR SMART; SM00468; PreSET; 1.
DR SMART; SM00317; SET; 1.
DR SUPFAM; SSF82199; SET domain; 1.
DR PROSITE; PS50867; PRE_SET; 1.
DR PROSITE; PS51580; SAM_MT43_3; 1.
DR PROSITE; PS50280; SET; 1.
PE 4: Predicted;
KW Chromosome {ECO:0000256|ARBA:ARBA00022454};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 401..498
FT /note="Pre-SET"
FT /evidence="ECO:0000259|PROSITE:PS50867"
FT DOMAIN 501..642
FT /note="SET"
FT /evidence="ECO:0000259|PROSITE:PS50280"
FT REGION 62..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 62..85
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 95..116
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 677 AA; 75976 MW; 02AC12F90E844B89 CRC64;
MELSKTSMEK IDDAIKSTAD FGFSKETVLR VLKKLLKVYD GNWEHIEADN YSVLADAILS
DSDPEEGQKK RAEKKNLDSD HHRKKLKTKE HGRKAKSCTH GSVKRELAEV PRQQEAESLE
GRTNANQLLE SSPTIISKEQ KMKISRAETT RIGENGSTLL ESQDPCTFET PLAVICPEVL
EPSCHNGHQD AHMISGVKHP TDKKFKGILV AHEGHMVDAC SSQAIVSSKD FSTNFQVELS
NYGKGKLSFL FNPSLANGSD FQMPGIQSIC KAMEAKCLRT YKILEPNFSF MKLLDDTCQC
ILDLGSGPNG GSADSGGNQN NPSNMRVIQH LPTGIKRQYH DVNDITRGEE CLSIPIVSGE
DGVLPPPFYY ISQNITFQDA YINLSLARIG DENCCSGCFG DCLAEPLPCA CARETGGEFA
YTRDGLLKEG FLDACVSMLR EPLEQSYFYC NGVCPIEQMK GVNKPEACKG HRIKKFIKEC
WRKCGCTRNC GNRVVQRGIT RKLQVFLTPG KKGWGLRSAE NLPRGAFVCE YVGEILTNTE
LYERNTELSG KNNQRTGKVK HTYPVLLDSD WGTEGVLKDE EALCLDGTFY GNVARFINHR
CFDCNIIAIP VEIETPDHHY YHLAFFTTRE VKPFEELTWD YEIDFDDVNH PIKAFKCHCG
SAFCRDRRRM SSVRRRI
//
