ID A0A199VZA0_ANACO Unreviewed; 937 AA.
AC A0A199VZA0;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=Protein RRP6-like 2 {ECO:0000313|EMBL:OAY82313.1};
GN ORFNames=ACMD2_06243 {ECO:0000313|EMBL:OAY82313.1};
OS Ananas comosus (Pineapple) (Ananas ananas).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae;
OC Bromelioideae; Ananas.
OX NCBI_TaxID=4615 {ECO:0000313|EMBL:OAY82313.1, ECO:0000313|Proteomes:UP000092600};
RN [1] {ECO:0000313|EMBL:OAY82313.1, ECO:0000313|Proteomes:UP000092600}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MD2 {ECO:0000313|Proteomes:UP000092600};
RC TISSUE=Leaf {ECO:0000313|EMBL:OAY82313.1};
RX PubMed=27374615; DOI=10.1093/dnares/dsw026;
RA Redwan R.M., Saidin A., Kumar S.V.;
RT "The draft genome of MD-2 pineapple using hybrid error correction of long
RT reads.";
RL DNA Res. 0:0-0(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OAY82313.1}.
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DR EMBL; LSRQ01000521; OAY82313.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A199VZA0; -.
DR STRING; 4615.A0A199VZA0; -.
DR Proteomes; UP000092600; Unassembled WGS sequence.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR InterPro; IPR049559; Rrp6p-like_exo.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 2.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000092600}.
FT DOMAIN 484..564
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 574..644
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 684..715
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 734..825
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 871..937
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 592..644
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 685..699
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 700..715
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 734..762
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 768..786
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 877..919
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 920..937
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 937 AA; 104869 MW; 2F52905F6CFE347C CRC64;
MEPDSPPASE SSLKHKADAL SSAAAKLAGR SRGIPSDRDF HFYNNFAEFK APLSEIIANS
EASLRSVAAS PLLWGSKKPP PFPDDLDEAF DWLVNLNDDF LERFGVSMDE FKSLREKEEE
SGVKIGGEDE SGFQLVYGKK KRASMRENEK DEDFLSSNSS QGVKVAMRDK MTTTAARSKV
PFHIPTIPRP QDEYHILVNN KNQPFEHVWL EKSEDGGQFI HPLEKLAVLD FVDRNIREVE
PVKPLPLEST PFKLVEEVKA LKDLASNLRG VSEFAVDLEH NHYRSFQGLT CLMQVSTRNE
DFIIDTLKLR IHVGPYLREI FKDPSKRKAY HLCFLHYFCL FIFLVMHGAD RDILWLQRDF
GIYVCNMFDT GQASRLLQLE RNSLEYLLHH FCGVNANKEY QNADWRLRPL PDEMIKYARE
DTHYLLHIYD LMKIRLLSSS TNESDLLLEV YKRSNEICLQ LYEKELLTDT SYLYIYGLQE
AEFSAKQLAI VAGLCQWRDS VARAEDESTG YILPNKTLLE IARQMPLSSG KLLRLVRSKH
PFVERYLSSV IGIIRSSIVN SAAFESIAEQ LKKGRLEQSA PESKEAQGDV GGGANKSSTM
QKAETASAPT TSTDRACPGD SELITSQQGE EKMKTISPSE TGRSLMLSDH PVAMDVENVG
NGNPLPTRKA TVASVQILKK PTAFGSLLGN SSSGRKPDSS RGAANKHDES KNKVEKIKSS
VILPFHYFSG TDNKLSDASR SEMNGPHQEN LQQGNKDSTD SVNMEEVIPL DNETNNSGSS
MGSPTTDDAA KHRPWFPPIQ ENSGNEGLQE ETDSVEKPVS PSELASSFEK CFQLMKQRRS
SQQNLSTSQE AQVTFQLKPF DYAAARKNIK FGNIGEYDGA KGDDDDDGVK ASRDSAGDKR
KGAPVGRGRG EEKGKSSQQP RRRQAFPLSG NRSTTYH
//
