ID A0A1A6DX01_9BURK Unreviewed; 517 AA.
AC A0A1A6DX01;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN ORFNames=A9O67_03230 {ECO:0000313|EMBL:OBS31206.1};
OS Tepidimonas fonticaldi.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Tepidimonas.
OX NCBI_TaxID=1101373 {ECO:0000313|EMBL:OBS31206.1, ECO:0000313|Proteomes:UP000091969};
RN [1] {ECO:0000313|EMBL:OBS31206.1, ECO:0000313|Proteomes:UP000091969}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PL17 {ECO:0000313|EMBL:OBS31206.1,
RC ECO:0000313|Proteomes:UP000091969};
RA Pinnaka A.K.;
RT "Genome sequence of Tepidimonas fonticaldi PL17.";
RL Submitted (JUN-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of RNA polymerase to specific initiation sites and are then
CC released. {ECO:0000256|PIRNR:PIRNR000774}.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798, ECO:0000256|PIRNR:PIRNR000774}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OBS31206.1}.
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DR EMBL; LZDH01000045; OBS31206.1; -; Genomic_DNA.
DR RefSeq; WP_068608112.1; NZ_LZDH01000045.1.
DR AlphaFoldDB; A0A1A6DX01; -.
DR STRING; 1101373.A9O67_03230; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000091969; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000774};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000774};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PIRNR:PIRNR000774}.
FT DOMAIN 147..348
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 360..515
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 50..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..143
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 517 AA; 56899 MW; 0C5E43950FCDC052 CRC64;
MKPGLALRVS QHLTLTPQLQ QSIRLLQLST LEMAQEVEQM LADNPFLERA EDDAADDPPE
PGGAAAGDAR AAPEDGGLPD TVTLIDGTAP DAATDWPARL DEDAGGWSTE ESGDGGEAAA
DWSWEGPGID RDGRQEDDER GPAAELARCA ERLQDHLHRQ ALALHLDDDE RAALYFLIES
LDDDGYLTEP LEDLTDALWQ QVRAAGDSGG EERRDELASL LRRALGWLQA MEPAGVGARH
LAECLRLQIL EQPNTPEARA ALALCEQPIE WIARRDMRRL AQATGLDDAA LRAGLALLTR
LEPKPGRRFA DAERQIIVPD VIVTVQGAQF DVQLNPAVLP RLRVSDLYAQ ALRGLRGGDL
QQRLQEARWF IKNLQQRFDT ILRVARAIVE RQRSFFLHGE VGMRPLVLRD IADELGLHES
TISRVTTAKY MATPFGTFEL KYFFGSSLGT DAGGNASSTA VRALIKQMIA AEDPRKPLSD
SQLADLLKEQ GIECARRTVA KYREALRIPT ASLRKTL
//
