ID A0A1A6G1B8_NEOLE Unreviewed; 1896 AA.
AC A0A1A6G1B8;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 22-FEB-2023, entry version 18.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS51805};
GN ORFNames=A6R68_08874 {ECO:0000313|EMBL:OBS59993.1};
OS Neotoma lepida (Desert woodrat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea;
OC Cricetidae; Neotominae; Neotoma.
OX NCBI_TaxID=56216 {ECO:0000313|EMBL:OBS59993.1, ECO:0000313|Proteomes:UP000092124};
RN [1] {ECO:0000313|EMBL:OBS59993.1, ECO:0000313|Proteomes:UP000092124}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=417 {ECO:0000313|EMBL:OBS59993.1};
RC TISSUE=Liver {ECO:0000313|EMBL:OBS59993.1};
RA Campbell M., Oakeson K.F., Yandell M., Halpert J.R., Dearing D.;
RT "The Draft Genome Sequence and Annotation of the Desert Woodrat Neotoma
RT lepida.";
RL Submitted (JUN-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OBS59993.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LZPO01107927; OBS59993.1; -; Genomic_DNA.
DR STRING; 56216.A0A1A6G1B8; -.
DR Proteomes; UP000092124; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR14955; RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20; 1.
DR PANTHER; PTHR14955:SF6; RETINOIC ACID-INDUCED PROTEIN 1; 1.
DR Pfam; PF13771; zf-HC5HC2H; 1.
DR SMART; SM00249; PHD; 1.
DR PROSITE; PS51805; EPHD; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000092124};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 1769..1892
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 1..283
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 298..366
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 374..393
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 446..504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 522..553
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 638..689
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 924..1540
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1583..1641
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1728..1760
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..32
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..72
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 176..218
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 225..242
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 249..283
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 312..363
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 453..467
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..497
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 971..993
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1086..1111
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1140..1154
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1257..1273
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1446..1461
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1483..1506
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1597..1637
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1728..1743
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1896 AA; 202296 MW; 5AC3DF0ECD8A2A03 CRC64;
MQSFRERCGF HGKQQNYPQT SQETSRLENY RQPGQAGLSC DRQRLLAKDY YNPQPYTGYE
GGTGTPSGTV ATTAADKYHR GTKSLQGRPA FPGYVQDSSP YPGRYSGEEG LQTWGGPQPP
PPQPQPLPGA VSKYEENLLK KTVVPPNRQY PEQGPQLPFR THSLHAPPPQ PQQPLAYPKL
QRQKPQNDLA SPLPFPQSSH FPQHSQSFPT SSTYAPAVQG GGQGAHSYKS CTAPSAQPHD
RPMSANASLA PGQRVQNLHA YQSGRLGYEQ QQQALQGRHH TQETLHYQNL AKYQHYGQQX
QGYCPPDTAV RTPEQYYQTF SPSSSHSPAR SVGRSPSYSS TPSPLMPNLE NFPYSQQPLS
TGAFPAGITD HSHFMPLLNP SPTDAASSVD PQVSNCKPLQ KEKLPDTLLS DLSLQSLTAL
TSQVENISNT VQQLLLSKAA MPQKKGVKSL VSRTPEQHKS QHCSPEGSGY SAEPAGTPLS
EPPSSTPQST HAEPQDTDYL SGSEDPLERS FLYCSQARGS PARVNNNSKA KPESVSTCSV
TSPDDMSTKS DDSFQSLHST LPLDSFSKFV AGERDCPRLL LSALAQEDLA SEILGLQEAI
VEKADKAWAE ASSLPKDNGK PPFSLENHST CLDTVAKTSW SQPGEPETLP EPLQLDKGGS
TKDFSPGLFE DPSVAFATTD PKKTTSPLSF GTKPLLGAAT PDPTTAAFDC FPDTTTASSV
DSANPFAWPE ENLGDACPRW GLHPGELTKG LEQGAKASDN VGKADAHETS ACLGFQEEHA
IGKPAATLSG DFKQQEADGV KEEVGGLLQC PEVGKADQWL EDSRHCCSST DFGDLPLLPP
PGRKEDLEAE EEYSSLCELL GSPEQRPSLQ DPLSPKAPLI CTKEEAEEVL DTKAGWASQC
HLSGEPAILL GPSVGAESKV QSWFESSLSH MKPGEDGPEM ERAPGSSTTS EGSLAPKPNK
PAVPEVPIAK KEPVPRGKSL RSRRVHRGLP EAEDSPCRVP ALPKDLLLPE SCTGPPQGQA
EGAGAPGRGL SEGLPRMCTR SLTALSEPQT PGPPGLTTTP TPPDKLGGKQ RAAFKSGKRV
GKPSPKAASS PSNPAALPVA SDSSPMGSKT KEPDSPSIPG KDQRSMVLRS RTKPQQVFHA
KRRRPSESRI PDCRATKKLP ANNHLPTAFK VSSGPQKEGR VSQRVRVPKP GTGSKLSDRP
LHTLKRKSAF MAPVPTKKRS LILRSSNGSG VEGREERAES SPGLLRRMAS PQRARPRGSG
EPPPPPPLEP PAACMGLATP SSLPSAVRTK VLPPRKGRGL KLEAIVQKIT SPGLKKLSCR
VAGPPPGTPR SPALPEKPSG GSPAGAEEGL GGTGPGQMLP AASGADPMCR NPASRSLKGK
LLSSKKLSSA TDCPKAEAFM SPETLPSLGT TRAPKKRSRK GRTGALGPSK GPLEKRPCPG
QTLILATHDR ASSTQGGGED SSSAGGKKPK TEELGLASQP PEGRPCQPQT RAQKQPGQAS
YSSYSKRKRL SRGRAKTTHA SPCKGRATRR RQQQVLPLDP AEPEIRLKYI SSCKRLRADS
RTPAFSPFVR VEKRDAYTTI CTVVNSPGDE PKPHWKPSSS AASSSSVSSS SSSEPAGTSL
TTFPGGSVLQ PRPSLPLSST MHLGPVVSKA LSTSCLVCCL CQNPANFKDL GDLCGPYYPE
HCLPKKKPKL KEKVRLEGTF EEASLPLERT VKGLECAAST TAATTTAATT TTITTTTTTL
GRLSRPDGPA DPAKQGSLRT SARGLSRRLQ SCYCCDGQGD GGEEVAPADK SRKHECSKEA
PAEPGGDTQE HWVHEACAVW TSGVYLVAGK LFGLQEAMKV AVDMPCSSCH EAGATISCSY
KGCIHTYHYP CANDTGCTFI EENFTLKCPK HKRLPL
//
