ID A0A1B3MZ56_9SPHN Unreviewed; 230 AA.
AC A0A1B3MZ56;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE SubName: Full=L,D-transpeptidase catalytic domain protein {ECO:0000313|EMBL:AOF98370.1};
GN ORFNames=BSY17_596 {ECO:0000313|EMBL:AOF98370.1};
OS Sphingobium sp. RAC03.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingobium.
OX NCBI_TaxID=1843368 {ECO:0000313|EMBL:AOF98370.1, ECO:0000313|Proteomes:UP000094323};
RN [1] {ECO:0000313|EMBL:AOF98370.1, ECO:0000313|Proteomes:UP000094323}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RAC03 {ECO:0000313|EMBL:AOF98370.1,
RC ECO:0000313|Proteomes:UP000094323};
RA Fixen K.R., Hovde B., Kunde Y.A., Davenport K.W., Johnson S.L., Li P.-E.,
RA Xu Y., Daligault H.E., Deodato C.R., Starkenburg S.R., Cattolico R.A.;
RL Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; CP016456; AOF98370.1; -; Genomic_DNA.
DR RefSeq; WP_069065051.1; NZ_CP016456.1.
DR AlphaFoldDB; A0A1B3MZ56; -.
DR STRING; 1843368.BSY17_596; -.
DR KEGG; sphr:BSY17_596; -.
DR PATRIC; fig|1843368.3.peg.614; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000094323; Chromosome.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF34; L,D-TRANSPEPTIDASE YCIB-RELATED; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000094323};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 107..215
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 39..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 39..59
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 230 AA; 23888 MW; A96AE1067CD241D3 CRC64;
MAALLKALAK SAGPKLAIGA GLAGIGLLAS GWIDRPAAEE PAPPAPIAKA PPAPAPAPAK
PAERRSDQPM TIDPRALTVK RVLKIDGPFR HGDYAWDESG APTTGPVIIT VDLRAQTLSV
FRAGYEIGAA VILYGATDKP SPLGAFPITQ KDADHYSNLY DNAPMPYMLR LTSDGVAIHG
SDVQWGKATH GCIGVPVAFA QKLFGVTKLG DVVVITNGKR LDVSKAQVGA
//
