ID A0A1B6PKN3_SORBI Unreviewed; 920 AA.
AC A0A1B6PKN3;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=SORBI_3006G069100 {ECO:0000313|EMBL:KXG26230.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG26230.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG26230.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000765; KXG26230.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1B6PKN3; -.
DR EnsemblPlants; KXG26230; KXG26230; SORBI_3006G069100.
DR Gramene; KXG26230; KXG26230; SORBI_3006G069100.
DR eggNOG; KOG4197; Eukaryota.
DR InParanoid; A0A1B6PKN3; -.
DR OMA; TIHAFFV; -.
DR OrthoDB; 444562at2759; -.
DR Proteomes; UP000000768; Chromosome 6.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF2036; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 4.
DR PROSITE; PS51375; PPR; 7.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 108..142
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 209..243
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 310..344
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 411..445
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 481..511
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 512..546
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 613..647
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 828..920
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 920 AA; 102807 MW; 3F6C50E72A35752D CRC64;
MTRREVAASV HRSLARFFVH DGPEKFHSLV AAKASHHRAL GSADLVCALQ ACRGRGNRWP
LVLEIHAASV VRGLGADRVI GNLLIDLYAK NGLVWQARQV FEELSSRDHV SWVAMLSGYA
QNGLGKEAFR LYSQMHWSAV VPTPYVMSSV LSACTKGKLF SQGRMIHAQV YKQAFCSETF
VGNALIALYL GYGSFKLAER VFCDMLFCDR VTFNTLISGH AQCGHGERAL QIFDEMQLSG
LRPDCVTVAS MLAACADVGD LQKGKQLHSY LLKAGMSFDY ITEGSLLDLY VKCGDIETAH
DIFNLGDRTN VVLWNLMLVA YGQVSDLAKS FEIFCQMQAT GIRPNQFTYP CILRTCTCSG
QIELGEQIHS LSIKNGFESD MYVSGVLIDM YSKYGRLDKA RKLLEMLDKK DVVSWTSMIA
GYVQHDFCEE ALATFKEMQN YGVWPDNVGL ASAASACAGI KAMRQGLQIH ARVYVSGYAA
DISIWNTLVN LYARCGRSEE AFSLFRAIEH KDEITWNGLI SGFGQSRLYE QALMVFMQMD
QAGAKYNVFT FVSSISALAN LADIKQGKQV HGRAVKTGHT SETEVANALI SLYGKCGSIE
DAKMIFSEMS LRNEVSWNTI ITSCSQHGRG LEALDLFDQM KQEGLKPNDV TFIGVLAACS
HVGLVEEGLS YFKSMSNVYG LNPTPDHYAC VVDILGRAGQ LDRARRFVDE MPITADAMVW
RTLLSACKVH KNIEIGELAA KHLLELEPHD SASYVLLSNA YAVTGKWANR DQVRKMMKDR
GIRKEPGRSW IEAKNAVHAF FVGDRLHPLS DQIYKFLSEL NDRLAKIGYK QEKPNLFHEK
EQEQKDPTAF VHSEKLAVAF GLMTLPPCIP LRVIKNLRVC DDCHSWMKFT SEVTRREIVL
RDVYRFHHFN SGSCSCGDYW
//
