ID A0A1B6Q591_SORBI Unreviewed; 1842 AA.
AC A0A1B6Q591;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=Homeobox-DDT domain protein RLT1 {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3003G252100 {ECO:0000313|EMBL:KXG33081.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG33081.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG33081.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
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DR EMBL; CM000762; KXG33081.1; -; Genomic_DNA.
DR STRING; 4558.A0A1B6Q591; -.
DR EnsemblPlants; KXG33081; KXG33081; SORBI_3003G252100.
DR Gramene; KXG33081; KXG33081; SORBI_3003G252100.
DR eggNOG; ENOG502QQYM; Eukaryota.
DR InParanoid; A0A1B6Q591; -.
DR OrthoDB; 394285at2759; -.
DR Proteomes; UP000000768; Chromosome 3.
DR ExpressionAtlas; A0A1B6Q591; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR007759; Asxl_HARE-HTH.
DR InterPro; IPR018501; DDT_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR044977; RLT1-3.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR028941; WHIM2_dom.
DR PANTHER; PTHR36968; HOMEOBOX-DDT DOMAIN PROTEIN RLT2; 1.
DR PANTHER; PTHR36968:SF5; HOMEOBOX-DDT DOMAIN PROTEIN RLT2; 1.
DR Pfam; PF02791; DDT; 1.
DR Pfam; PF05066; HARE-HTH; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF15612; WHIM1; 1.
DR Pfam; PF15613; WSD; 1.
DR SMART; SM00571; DDT; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50827; DDT; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS51913; HTH_HARE; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 52..112
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 632..691
FT /note="DDT"
FT /evidence="ECO:0000259|PROSITE:PS50827"
FT DOMAIN 807..876
FT /note="HTH HARE-type"
FT /evidence="ECO:0000259|PROSITE:PS51913"
FT DNA_BIND 54..113
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 1..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 109..131
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 371..407
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 429..457
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 503..557
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 899..957
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 978..1028
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1595..1842
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 392..407
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 910..939
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1652..1674
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1689..1705
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1730..1746
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1775..1825
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1842 AA; 205292 MW; 83BC643BA25935C5 CRC64;
MDAGGDGDGD GAGKATQEAP AEATTPPPAP VAAPVPVSAS ATGAGAGTSG SGEKPVKRMM
KTPYQLEVLE KTYAAEQYPS EAMRLELSAK IGLSDRQLQM WFCHRRLKDR KPPTKRQRRE
EESALAPVMP PPPVLPAPVS VMPLASSDLM VGAPGPYDEP LHPVHSRRGA GRSSAVPRIS
MPDIGRRYYE PTPIMIAPAI PSMQLTQSEL RVINSVESQL GEPLREDGPA LGVEFDPLPP
GAFGAPIVPE QQKQPVRSYD TKIFSRHDQK LLKASAFLPT MESPFVPNSF TGKRKSTVGN
TPIVQPHVGS RAVHEYQFLP EQPSDTYERA SRSHYYDTPV EVSNSRISSL TSGSQLLHGS
EAAAPSYAFQ GHTSGSSLMP QPSRSQVFPG APADYETTQS NSNLNSVPVE GQFDISQVAA
FENPLVSSER RAYHDEDTSR VERKRKHNEE AKIAKEVEAH ERRIRKELEK QDILNRKREE
QRRKEMERLD RERRKEEERL LRERQREEER FQREQRREHE RMEKLLQKQS RRAEKQRQKE
ELRKEKEAAR QKAANERATA RRIAREYMEL VEDERLELME LAAQNKGLPS MLHLDSDTLQ
QLDSFRGMLS QFPPTTVRLK LPFSIKPWTG SEDNVGKLLM VWKFFITFTD VLGLCPVTLD
EFVQSLHDYD SRLLGELHVA LLKSIIKDIE DVARTQSIAL GVNPGGHPQI VEGAYAWGFN
IRSWQRHLNL LTWPEILRQF ALSAGFGPQL KKRTVEDSYY RNDNEGHDGE NVISTLRNGS
AAVNAAAKMK ERGYTNRRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV AEKIQKSGLR
DLTTSKTPEA SIAAALSRDA KLFERTAPST YCVKSPYRKD PADSEAVLSA AREKIRAFQN
VLSDSEAEKE ADEAERDDDS ECDDADDDPD GDDVNTEVED DKDPPLAVKA QDEVPSTTTV
IGIRSELDSV GNALNSSSSF TKSAKGTPLP SLGKSDAADT SNDSPLGGSS ANHEVAPGDS
ENTQIDESNQ VEPWVRALAE GDYCDLSVEE RLNALVALVG VATEGNSIRG VLEERLELAN
ALKKQMWAEA QLDKRRSKEE FASRVQYNSD MGLKADLYQE NNATENDGHV GTMNSCEMLD
QHNQGNFGSM AYERNGIGQE ILATPDTSYV QQYAYADKTR SQLKSYIGHR AEQLYVYRSL
PLGQDRRRNR YWQFTTSASP NDPGSGRIFF ESKDGCWRVI DSEEAFDSLV AALDTRGSRE
AQLHSMLQVI EPTFKEAIKR RSASIELPAG RYPKNGATDM IRANYHSEVG SSSSTPFGAT
SDIVTAYSDS FKVELGRNDF EKTAISKRAD KFLKWMWREC YNQELTCAMK YGKKRCSELL
HSCNCCYQIY LAEERHCPSC HKTFKSIYNF SDHTTQCEEK RRTDPYWKMQ IADYSVPIGM
VLLKLQLVTI EACIPSEALQ PFWTDVYRKS WSVKLYTTKS IAETFQLLTV LEGAIRPGCL
SSDFETTSEC LNSQGIAPHN PVLPAGSASA LPWVPDTTSA VMLRMLDLDS AISYVQNQKM
ERDDGGFMKF PSRYTVAKSK QEGILEPTGL NLYDGRWLPG SGRRGRGRGS RGGSRGGRGR
SRGGRIPRGV SSSSRIEFKD DIVASDKAPR KNARRGRARG RGSRRGRRTV RPRQPSAGRA
RSIPKENLLG SFSMLSSSKP APVEESPQSS GADEWGLETR VTYNECDENS SGSESEDNEE
NGQPMDEDYE EHVPDYSVGY SSRSRHHGTM SMMDHETDEE DDDAEGDENV EEDDADQAVD
DADVEMDEDD EIGDDGEDGN LGGEMNADED PDATSYSSDY SE
//
