ID A0A1B6QMY0_SORBI Unreviewed; 503 AA.
AC A0A1B6QMY0;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=SORBI_3001G356500 {ECO:0000313|EMBL:KXG39276.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG39276.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG39276.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000760; KXG39276.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1B6QMY0; -.
DR STRING; 4558.A0A1B6QMY0; -.
DR EnsemblPlants; KXG39276; KXG39276; SORBI_3001G356500.
DR Gramene; KXG39276; KXG39276; SORBI_3001G356500.
DR eggNOG; KOG1190; Eukaryota.
DR InParanoid; A0A1B6QMY0; -.
DR OMA; SWDPAMQ; -.
DR OrthoDB; 4825346at2759; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR CDD; cd12686; RRM1_PTBPH1_PTBPH2; 1.
DR CDD; cd12690; RRM3_PTBPH1_PTBPH2; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR034792; PTBPH1/PTBPH2_RRM1.
DR InterPro; IPR034794; PTBPH1/PTBPH2_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF14; POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 1; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13893; RRM_5; 1.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 19..97
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 371..503
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 380..394
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 406..456
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 468..503
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 503 AA; 53706 MW; D05929FDC05CB58B CRC64;
MSSGGGGGQQ FRYAQTPSKV LHLRNLPWEC AEEELVELCK PFGRIVNTKS GVGVNRNQAF
VEFTDVNQAI AMVSYFASSS EPAQIRGKPV YIQYSNRQEI VNNKSPGETA GNVLLVTMEG
VQASDVTIDV IHMVFSAFGY VHKIATFEKA AGFQALIQYT DAATASAARD ALDGRSIPSY
LLPEHVTSCC LRISFSAHQD LNIKFQSNRS RDYNNPYLPI NYSAMDGTLQ PVVGADGRKV
EAQGNVLLAS IENMQYAVTV DVLHTVFSSF GTVQKIAIFE KNGGTQALIQ YPDVNTAAVA
KEALEGHCIY DGGYCKLHLS YSRHTDLNVK AHGDKSRDYT IPAGVTQGVP QPPGVQATSF
GWQGNLQAAG AYAPPGAPAQ SHNANGQMPN WNPGNSVYPP GPGTYPGQMY SSSSQYATSG
GFPNTPSTTP PQYAASGGFP STPSTAPPQY AASGGFPNTP TGAPPGILPQ QLHTSQQMPP
QHENQSRGTP GTSQPPPSAS YYR
//
