ID A0A1B6QPF6_SORBI Unreviewed; 668 AA.
AC A0A1B6QPF6;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=SORBI_3001G440300 {ECO:0000313|EMBL:KXG39793.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG39793.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG39793.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000760; KXG39793.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1B6QPF6; -.
DR EnsemblPlants; KXG39793; KXG39793; SORBI_3001G440300.
DR Gramene; KXG39793; KXG39793; SORBI_3001G440300.
DR InParanoid; A0A1B6QPF6; -.
DR OMA; FFNVMIR; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015:SF1832; OS03G0241800 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 160..190
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 191..226
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 260..294
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 361..395
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 576..668
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 668 AA; 73302 MW; 21527496C48F1B96 CRC64;
MHASRSHLPT SGESLLRLVS ACRAPAHLPS LRAAHARLLV LLHPSHPSAA HASVKLIQAY
AACSALPLAH AVLESSSSSS AGGSSRTTTV CFNVLIRALT AASLHRDALV LFASMRPRGP
ACSPDHYTYP LVLKSCAASN DLLLGLQIHS AVAKLRLDAN VYVAHSAISM YARCGRPEDA
YRVFDGMQHR DVVSWNAMIA GFARAGLFDR AIEVFKQFVV LPGSMPDAGT MAGILSAMGN
AKSEDIVFVR SVFNNMQFKE LISWNAMLAV YANNGYHVKA VELFMLMEKD EVEPDSVTLA
TVLPPCGELS AFSVGKRIHE IIKRKNMCPN LLLENALMDM YANCGCLKGA RDVFDSMSAR
DVISWTSIIS AYGKHGHGRE AVYLFEKMLE EGLKPDSIAF VAVLAACSHA GLLDDGKSYF
DSMTSRYHIT PKAEHYTCMV DLLGRAGCIS EAYDFITTML IEPNERVWGA LLQACRIHSN
MDIGLVAADN LFRLVPEQTG YYVLLSNMYA RAGRWADVTS VRSVMVNKGI KKFPGTSIVE
LGDRVHTFHI GDRCHPQSEM IYQKLDELLG KIRRMGYNPE VEATLHDVEE EDKEGHLSVH
SEKLAIAFLL LNTSPGTTIR VTMNLRTCSD CHLAAKLISV ITSTEIILKD TNRIHHIVQG
VCSCGDYW
//
