ID A0A1B7LAM0_9FIRM Unreviewed; 604 AA.
AC A0A1B7LAM0;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE SubName: Full=Sigma-54-dependent Fis family transcriptional regulator {ECO:0000313|EMBL:OAT79360.1};
GN ORFNames=A6M21_16055 {ECO:0000313|EMBL:OAT79360.1};
OS Desulfotomaculum copahuensis.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae;
OC Desulfotomaculum.
OX NCBI_TaxID=1838280 {ECO:0000313|EMBL:OAT79360.1, ECO:0000313|Proteomes:UP000078532};
RN [1] {ECO:0000313|EMBL:OAT79360.1, ECO:0000313|Proteomes:UP000078532}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LMa1 {ECO:0000313|EMBL:OAT79360.1,
RC ECO:0000313|Proteomes:UP000078532};
RA Evans L.H., Alamgir A., Owens N., Weber N.D., Virtaneva K., Barbian K.,
RA Babar A., Rosenke K.;
RL Submitted (APR-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OAT79360.1}.
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DR EMBL; LYVF01000198; OAT79360.1; -; Genomic_DNA.
DR RefSeq; WP_066671765.1; NZ_LYVF01000198.1.
DR AlphaFoldDB; A0A1B7LAM0; -.
DR STRING; 1838280.A6M21_16055; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000078532; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000078532};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 153..198
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 281..511
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 604 AA; 66164 MW; 62A558364977D644 CRC64;
MSRLAQVKTD CQRVAGAIAA ALGVEVEVID LDLVRVAGTG KVRNDVGSRL QRGLVNKHVL
EHGRPIFIQE AGYHAICRSC PLTGSCFYKS CIVYPVMAGE TIAGTISLIA FNGEQKSTLC
SRIDSLMEFI GRMADLIGSK VQEQEAMTEK IIMAGQVNAV MNAVDEGVIA VDGNGLVTHF
NLSAERMFHI PKDEILNRPL EEHLTGLPLL KAMHGVNGTA ARECFVHARG RKLHLLVTVK
PVLDSSGRPA GVVASARDFR ETQKLAYEIM SAQKALTLAD IVGESPAMLE LKARAAKIAG
SDSTVLITGE SGTGKEIFAR AIHAASPRHN KPFVAINCGA IPETLLESEL FGYEEGAFTG
ARRGGKPGKF ELANHGTIFL DEIGNMSLYL QAKLLRVLQE RQIERVGGSR LIPVDIRVIA
ATNGNLSEMI AGGHFRDDLY YRLSVIPLTI PPLRERPGDT GLLLEHYRRH YSTLLNKGIK
GFAAPARRAC LDYSWPGNVR ELINAVEYAV NLEEGEFIAP ASLPVHIREA GRRPAEIAHN
QNRWQTIEQM EKEAIAQALE QFGWTEQGKS EAARVLGISR ATIYRKISRY NLTPRQTRGT
IMIR
//
