ID A0A1B7UM50_9GAMM Unreviewed; 381 AA.
AC A0A1B7UM50;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE SubName: Full=Ribonuclease D {ECO:0000313|EMBL:OBP15508.1};
GN ORFNames=A5320_09205 {ECO:0000313|EMBL:OBP15508.1};
OS Rheinheimera sp. SA_1.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Rheinheimera.
OX NCBI_TaxID=1827365 {ECO:0000313|EMBL:OBP15508.1, ECO:0000313|Proteomes:UP000092258};
RN [1] {ECO:0000313|EMBL:OBP15508.1, ECO:0000313|Proteomes:UP000092258}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SA_1 {ECO:0000313|EMBL:OBP15508.1,
RC ECO:0000313|Proteomes:UP000092258};
RA Lavstsen T., Jespersen J.S.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OBP15508.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LXWK01000015; OBP15508.1; -; Genomic_DNA.
DR RefSeq; WP_068064108.1; NZ_LXWK01000015.1.
DR AlphaFoldDB; A0A1B7UM50; -.
DR STRING; 1827365.A5320_09205; -.
DR OrthoDB; 9800549at2; -.
DR Proteomes; UP000092258; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0033890; F:ribonuclease D activity; IEA:InterPro.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd06142; RNaseD_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR006292; RNase_D.
DR InterPro; IPR048579; RNAseD_HRDC_C.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR NCBIfam; TIGR01388; rnd; 1.
DR PANTHER; PTHR47649; RIBONUCLEASE D; 1.
DR PANTHER; PTHR47649:SF1; RIBONUCLEASE D; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR Pfam; PF21293; RNAseD_HRDC_C; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 2.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022839};
KW Nuclease {ECO:0000256|ARBA:ARBA00022839};
KW Reference proteome {ECO:0000313|Proteomes:UP000092258};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694}.
FT DOMAIN 210..290
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
SQ SEQUENCE 381 AA; 42807 MW; F32D7729B29D4CAE CRC64;
MSYRMITDNL QLAEFCQSSL CAPFLAVDTE FVRINTLLPK LGLIQLYAGA DLVLVDPLTI
TDWQPLAELL AAPSVVKLLH SCNEDLEAFA SVGLVQIQPL LDTQLAAELA GMGSSLGYAK
MVEQLLGKQV DKTESRTDWL ARPLAQTQLE YAAFDVLYLF QLKDLLLAKL PDPKFLPLLL
AEGGQMINRR QHQLPVSFKY LEMKNSWQCP PRELAVLRAL TSWRAGYATQ KDTALGLVLK
DAVMYELAKR RPVTLEGLAQ IQDLHPRELR RHGAVLLEII AETKLLSAEQ CPQTFYHQSD
FAGFKQVQQE LTDAVEQAAN ASGIPAGFLS VKRQLNEYLN WCWRVSDTER AQLPTPEYLR
GWRRDILLPY LPKPAHVAAL I
//
