ID   A0A1C7H264_9BACE        Unreviewed;       494 AA.
AC   A0A1C7H264;
DT   30-NOV-2016, integrated into UniProtKB/TrEMBL.
DT   30-NOV-2016, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:ANU58823.1};
GN   ORFNames=A4V03_15665 {ECO:0000313|EMBL:ANU58823.1};
OS   Bacteroides caecimuris.
OC   Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
OC   Bacteroides.
OX   NCBI_TaxID=1796613 {ECO:0000313|EMBL:ANU58823.1, ECO:0000313|Proteomes:UP000092631};
RN   [1] {ECO:0000313|Proteomes:UP000092631}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=I48 {ECO:0000313|Proteomes:UP000092631};
RA   Uchimura Y., Wyss M., Brugiroux S., Limenitakis J.P., Stecher B.,
RA   McCoy K.D., Macpherson A.J.;
RT   "Complete Genome Sequences of Twelve Strains of a Stable Defined Moderately
RT   Diverse Mouse Microbiota 2 (sDMDMm2).";
RL   Submitted (APR-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP015401; ANU58823.1; -; Genomic_DNA.
DR   RefSeq; WP_065539609.1; NZ_NHMU01000007.1.
DR   AlphaFoldDB; A0A1C7H264; -.
DR   GeneID; 82188579; -.
DR   KEGG; bcae:A4V03_15665; -.
DR   OrthoDB; 9814402at2; -.
DR   Proteomes; UP000092631; Chromosome.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   NCBIfam; TIGR02395; rpoN_sigma; 1.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000092631};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          115..312
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          337..494
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
FT   REGION          48..111
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        58..88
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        89..111
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   494 AA;  56890 MW;  765E8D9076BFA228 CRC64;
     MAQGSRQIQS QAQQQVQTLS PQQILVVKLL ELPAVELEDR IHAELLENPA LEEGKEENAA
     DEYADSDITE DGMDSDTNDY DSLSDYLNED DIPDYKLQEN NRSKDEQAED IPFSDSTSFY
     EILKEQLRER NLTEHQSDLV EYLIGSLDDD GLLRKSLESI CDELAIYAGI ESTEEELEEA
     LCILQDFDPA GIGARSLQEC LLIQICRKKD EEKKPNPILE LEERIIRECY EEFTRKHWEK
     IIKKLDIDEE TFQEALNEIT KLNPRPGASL GETIGRNLQQ IVPDFIVETY DDGTINVSLN
     NRNVPELRMS RDFTEMVEEH TKNRANQSKE SKEAMMFLKQ KMDAAQGFID AVRQRQNTLM
     TTMQAIIDLQ RPFFLEGDES LLKPMILKDV AERTGLDIST ISRVSNSKYV QTNYGIYPLK
     FFFSDGYTTE DGEEMSVREI RKILKECIDG EDKKKPLTDD ELADILKEKG YPIARRTVAK
     YRQQLNIPVA RLRK
//