GenomeNet

Database: UniProt
Entry: A0A1D6GDY8
LinkDB: A0A1D6GDY8
Original site: A0A1D6GDY8 
ID   RH3A_MAIZE              Reviewed;         745 AA.
AC   A0A1D6GDY8;
DT   30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT   30-NOV-2016, sequence version 1.
DT   16-OCT-2019, entry version 24.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 3A, chloroplastic {ECO:0000305};
DE            Short=ZmRH3A {ECO:0000305};
DE            EC=3.6.4.13 {ECO:0000305};
DE   Flags: Precursor;
GN   Name=RH3A {ECO:0000305};
GN   ORFNames=ZEAMMB73_Zm00001d012922 {ECO:0000312|EMBL:AQK61830.1};
OS   Zea mays (Maize).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae;
OC   PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC   Zea.
OX   NCBI_TaxID=4577;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. B73;
RX   PubMed=19965430; DOI=10.1126/science.1178534;
RA   Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA   Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA   Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA   Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA   Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA   Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA   Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA   Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA   Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA   Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA   Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA   Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA   Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA   Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA   Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA   Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA   Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA   Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA   Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA   Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA   Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA   Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA   Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA   Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA   Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA   Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA   Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA   Wing R.A., Wilson R.K.;
RT   "The B73 maize genome: complexity, diversity, and dynamics.";
RL   Science 326:1112-1115(2009).
CC   -!- FUNCTION: Nuclear genome-encoded factor involved in ribosome
CC       biogenesis in chloroplasts. Binds specific group II introns in
CC       chloroplasts and facilitates their splicing. Required for normal
CC       development of chloroplasts. {ECO:0000250|UniProtKB:A0A1D6LAB7}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC         Evidence={ECO:0000305};
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis. {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50
CC       subfamily. {ECO:0000305}.
DR   EMBL; CM000781; AQK61830.1; -; Genomic_DNA.
DR   RefSeq; XP_008681151.1; XM_008682929.1.
DR   SMR; A0A1D6GDY8; -.
DR   STRING; 4577.GRMZM2G415491_P01; -.
DR   EnsemblPlants; Zm00001d012922_T003; Zm00001d012922_P003; Zm00001d012922.
DR   GeneID; 100193526; -.
DR   Gramene; Zm00001d012922_T003; Zm00001d012922_P003; Zm00001d012922.
DR   OrthoDB; 1139373at2759; -.
DR   Proteomes; UP000007305; Chromosome 5.
DR   ExpressionAtlas; A0A1D6GDY8; baseline and differential.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009658; P:chloroplast organization; ISS:UniProtKB.
DR   GO; GO:0000373; P:Group II intron splicing; ISS:UniProtKB.
DR   GO; GO:0042254; P:ribosome biogenesis; ISS:UniProtKB.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR012562; GUCT.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   InterPro; IPR001878; Znf_CCHC.
DR   InterPro; IPR036875; Znf_CCHC_sf.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF08152; GUCT; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF00098; zf-CCHC; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00343; ZnF_C2HC; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF57756; SSF57756; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   3: Inferred from homology;
KW   ATP-binding; Chloroplast; Complete proteome; Helicase; Hydrolase;
KW   Metal-binding; Nucleotide-binding; Plastid; Reference proteome;
KW   Ribosome biogenesis; RNA-binding; Transit peptide; Zinc; Zinc-finger.
FT   TRANSIT       1     41       Chloroplast. {ECO:0000255}.
FT   CHAIN        42    745       DEAD-box ATP-dependent RNA helicase 3A,
FT                                chloroplastic.
FT                                /FTId=PRO_0000441394.
FT   DOMAIN      119    295       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      324    469       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND     132    139       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   ZN_FING     727    744       CCHC-type. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00047}.
FT   MOTIF        88    116       Q motif. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00552}.
FT   MOTIF       243    246       DEAD box. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   COMPBIAS    665    726       Ser-rich. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00016}.
SQ   SEQUENCE   745 AA;  80384 MW;  7885203EC936E5BD CRC64;
     MASLVTLPAI AFSNPATASG AVRLRAAAFR CWALRRRGWA VAAAVASPNS VLSEHAFKRL
     QLGSDDEDEE GPYGSDADEG FQGDEEELAI ARLGLPDELV ATLEKRGITH LFPIQRAVLI
     PALGGRDLIA RAKTGTGKTL AFGIPMIKQL MEQDDGRSTR RGRTPRVLVL APTRELAKQV
     EKEIKESAPK LGTVCVYGGV SYNVQQNALS RGVDVVVGTP GRIIDLINGG SLQLGEVQYL
     VLDEADQMLA VGFEEDVETI LQQLPADRQS MLFSATMPSW VKKLSRRYLN NPLTIDLVGD
     QDEKLAEGIK LHAIPLTATS KRTILSDLIT VYAKGGKTIV FTRTKKDADE VSLALTTSIA
     SEALHGDISQ HQRERTLNGF RQGKFTVLVA TDVAARGLDI PNVDLIIHYE LPNDPETFVH
     RSGRTGRAGK AGTAILMFTS SQKRTVMSLE RDVGCKFEFI SPPSIEEVLE SSAEHVIATL
     RGVHPESTQY FLGAAEKLTE ELGPHALASA LAHLSGFSQP PSSRSLISYE QGWVTLQLTR
     EPGYGRGFFS PRSVTGFLSD VCSAAADEVG KIYITADENV QGAVFDLPEE IAKDLLTMEV
     PPGNTLTKIS KLPALQDDSP ATDSYGRFSN DRGSRNRRSR GGGASRGRGG WDTDSEDRYR
     RGGRSLRSDN DSWSDDDWSG GGRKSNRSSS SFGGRSSSYG SRGSPSPSFG VRSSSLGGRE
     SSRSFSGACF NCGESGHRAS DCPNK
//
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