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Database: UniProt
Entry: A0A1D7NPF3_9SPHN
LinkDB: A0A1D7NPF3_9SPHN
Original site: A0A1D7NPF3_9SPHN 
ID   A0A1D7NPF3_9SPHN        Unreviewed;       407 AA.
AC   A0A1D7NPF3;
DT   18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT   18-JAN-2017, sequence version 1.
DT   24-JAN-2024, entry version 35.
DE   RecName: Full=Ribosomal large subunit pseudouridine synthase D {ECO:0000256|ARBA:ARBA00040039};
DE            EC=5.4.99.23 {ECO:0000256|ARBA:ARBA00038942};
DE   AltName: Full=23S rRNA pseudouridine(1911/1915/1917) synthase {ECO:0000256|ARBA:ARBA00042264};
DE   AltName: Full=rRNA pseudouridylate synthase D {ECO:0000256|ARBA:ARBA00042840};
DE   AltName: Full=rRNA-uridine isomerase D {ECO:0000256|ARBA:ARBA00043148};
GN   ORFNames=BG023_112732 {ECO:0000313|EMBL:AOL95641.1};
OS   Porphyrobacter sp. LM 6.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Erythrobacteraceae; Erythrobacter/Porphyrobacter group; Porphyrobacter.
OX   NCBI_TaxID=1896196 {ECO:0000313|EMBL:AOL95641.1, ECO:0000313|Proteomes:UP000094080};
RN   [1] {ECO:0000313|EMBL:AOL95641.1, ECO:0000313|Proteomes:UP000094080}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=LM 6 {ECO:0000313|EMBL:AOL95641.1,
RC   ECO:0000313|Proteomes:UP000094080};
RA   Hentchel K., Vargas G., Fiebig A., Coleman M., Crosson S.;
RT   "Genome sequences of bacteria isolated from the littoral zone of southern
RT   Lake Michigan.";
RL   Submitted (AUG-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=uridine(1911/1915/1917) in 23S rRNA =
CC         pseudouridine(1911/1915/1917) in 23S rRNA; Xref=Rhea:RHEA:42524,
CC         Rhea:RHEA-COMP:10097, Rhea:RHEA-COMP:10098, ChEBI:CHEBI:65314,
CC         ChEBI:CHEBI:65315; EC=5.4.99.23;
CC         Evidence={ECO:0000256|ARBA:ARBA00036882};
CC   -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family.
CC       {ECO:0000256|ARBA:ARBA00010876}.
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DR   EMBL; CP017113; AOL95641.1; -; Genomic_DNA.
DR   RefSeq; WP_069310892.1; NZ_CP017113.1.
DR   AlphaFoldDB; A0A1D7NPF3; -.
DR   STRING; 1896196.BG023_112732; -.
DR   KEGG; porl:BG023_112732; -.
DR   PATRIC; fig|1896196.3.peg.2709; -.
DR   OrthoDB; 9807829at2; -.
DR   Proteomes; UP000094080; Chromosome.
DR   GO; GO:0140098; F:catalytic activity, acting on RNA; IEA:UniProt.
DR   GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR   GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro.
DR   CDD; cd02869; PseudoU_synth_RluA_like; 1.
DR   Gene3D; 3.30.2350.10; Pseudouridine synthase; 1.
DR   Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR   InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR   InterPro; IPR006224; PsdUridine_synth_RluA-like_CS.
DR   InterPro; IPR006225; PsdUridine_synth_RluC/D.
DR   InterPro; IPR006145; PsdUridine_synth_RsuA/RluA.
DR   InterPro; IPR036986; S4_RNA-bd_sf.
DR   NCBIfam; TIGR00005; rluA_subfam; 1.
DR   PANTHER; PTHR21600; MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE; 1.
DR   PANTHER; PTHR21600:SF44; RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D; 1.
DR   Pfam; PF00849; PseudoU_synth_2; 1.
DR   SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR   SUPFAM; SSF55120; Pseudouridine synthase; 1.
DR   PROSITE; PS01129; PSI_RLU; 1.
DR   PROSITE; PS50889; S4; 1.
PE   3: Inferred from homology;
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT   DOMAIN          110..260
FT                   /note="Pseudouridine synthase RsuA/RluA-like"
FT                   /evidence="ECO:0000259|Pfam:PF00849"
FT   REGION          70..89
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          330..407
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        337..354
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        372..407
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   ACT_SITE        153
FT                   /evidence="ECO:0000256|PIRSR:PIRSR606225-1"
SQ   SEQUENCE   407 AA;  43949 MW;  C3473E7248EEDD69 CRC64;
     MTGTPAPTDN VRQFTVGEDD DGIRLDRWFK RNLPQVGFAT VSRWARTGQI RVDGKRAKPE
     DRLEAGQVLR VPPGGEDAPR QAAKPKARPL TPEQIAEAHD MVIRETPTAI VLNKPPGLAT
     QGGSKTTKHV DGLLDAFVTD EKTPRPRLVH RLDKDTSGVL LIARTPGSAA SFSKRFASRS
     ARKVYWALVV GVPQLSEGVI DAPLAKQPGT GGEKMHIDEE NGAAAKTRYR VVDKAGQRAA
     WVELEPLTGR THQLRVHMAA IGHPIVGDGK YGGPDAFLTG AVSRKMHLHA RRLIITEPKA
     GEGSGGKLDV TAELPPHFAA SMEVLGFDPG LSDASPLRED IPEKSAEEKK QAARRHFKQA
     RKETRSPRRA RGAANAKAKP KGKPKPKPPA KPKSGGKPKG AGRKPTR
//
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