ID A0A1D7NPF3_9SPHN Unreviewed; 407 AA.
AC A0A1D7NPF3;
DT 18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT 18-JAN-2017, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=Ribosomal large subunit pseudouridine synthase D {ECO:0000256|ARBA:ARBA00040039};
DE EC=5.4.99.23 {ECO:0000256|ARBA:ARBA00038942};
DE AltName: Full=23S rRNA pseudouridine(1911/1915/1917) synthase {ECO:0000256|ARBA:ARBA00042264};
DE AltName: Full=rRNA pseudouridylate synthase D {ECO:0000256|ARBA:ARBA00042840};
DE AltName: Full=rRNA-uridine isomerase D {ECO:0000256|ARBA:ARBA00043148};
GN ORFNames=BG023_112732 {ECO:0000313|EMBL:AOL95641.1};
OS Porphyrobacter sp. LM 6.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Erythrobacteraceae; Erythrobacter/Porphyrobacter group; Porphyrobacter.
OX NCBI_TaxID=1896196 {ECO:0000313|EMBL:AOL95641.1, ECO:0000313|Proteomes:UP000094080};
RN [1] {ECO:0000313|EMBL:AOL95641.1, ECO:0000313|Proteomes:UP000094080}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LM 6 {ECO:0000313|EMBL:AOL95641.1,
RC ECO:0000313|Proteomes:UP000094080};
RA Hentchel K., Vargas G., Fiebig A., Coleman M., Crosson S.;
RT "Genome sequences of bacteria isolated from the littoral zone of southern
RT Lake Michigan.";
RL Submitted (AUG-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=uridine(1911/1915/1917) in 23S rRNA =
CC pseudouridine(1911/1915/1917) in 23S rRNA; Xref=Rhea:RHEA:42524,
CC Rhea:RHEA-COMP:10097, Rhea:RHEA-COMP:10098, ChEBI:CHEBI:65314,
CC ChEBI:CHEBI:65315; EC=5.4.99.23;
CC Evidence={ECO:0000256|ARBA:ARBA00036882};
CC -!- SIMILARITY: Belongs to the pseudouridine synthase RluA family.
CC {ECO:0000256|ARBA:ARBA00010876}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CP017113; AOL95641.1; -; Genomic_DNA.
DR RefSeq; WP_069310892.1; NZ_CP017113.1.
DR AlphaFoldDB; A0A1D7NPF3; -.
DR STRING; 1896196.BG023_112732; -.
DR KEGG; porl:BG023_112732; -.
DR PATRIC; fig|1896196.3.peg.2709; -.
DR OrthoDB; 9807829at2; -.
DR Proteomes; UP000094080; Chromosome.
DR GO; GO:0140098; F:catalytic activity, acting on RNA; IEA:UniProt.
DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro.
DR CDD; cd02869; PseudoU_synth_RluA_like; 1.
DR Gene3D; 3.30.2350.10; Pseudouridine synthase; 1.
DR Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR InterPro; IPR006224; PsdUridine_synth_RluA-like_CS.
DR InterPro; IPR006225; PsdUridine_synth_RluC/D.
DR InterPro; IPR006145; PsdUridine_synth_RsuA/RluA.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR NCBIfam; TIGR00005; rluA_subfam; 1.
DR PANTHER; PTHR21600; MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE; 1.
DR PANTHER; PTHR21600:SF44; RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D; 1.
DR Pfam; PF00849; PseudoU_synth_2; 1.
DR SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR SUPFAM; SSF55120; Pseudouridine synthase; 1.
DR PROSITE; PS01129; PSI_RLU; 1.
DR PROSITE; PS50889; S4; 1.
PE 3: Inferred from homology;
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 110..260
FT /note="Pseudouridine synthase RsuA/RluA-like"
FT /evidence="ECO:0000259|Pfam:PF00849"
FT REGION 70..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 330..407
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 337..354
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 372..407
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 153
FT /evidence="ECO:0000256|PIRSR:PIRSR606225-1"
SQ SEQUENCE 407 AA; 43949 MW; C3473E7248EEDD69 CRC64;
MTGTPAPTDN VRQFTVGEDD DGIRLDRWFK RNLPQVGFAT VSRWARTGQI RVDGKRAKPE
DRLEAGQVLR VPPGGEDAPR QAAKPKARPL TPEQIAEAHD MVIRETPTAI VLNKPPGLAT
QGGSKTTKHV DGLLDAFVTD EKTPRPRLVH RLDKDTSGVL LIARTPGSAA SFSKRFASRS
ARKVYWALVV GVPQLSEGVI DAPLAKQPGT GGEKMHIDEE NGAAAKTRYR VVDKAGQRAA
WVELEPLTGR THQLRVHMAA IGHPIVGDGK YGGPDAFLTG AVSRKMHLHA RRLIITEPKA
GEGSGGKLDV TAELPPHFAA SMEVLGFDPG LSDASPLRED IPEKSAEEKK QAARRHFKQA
RKETRSPRRA RGAANAKAKP KGKPKPKPPA KPKSGGKPKG AGRKPTR
//