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Database: UniProt
Entry: A0A1E3PYD9_LIPST
LinkDB: A0A1E3PYD9_LIPST
Original site: A0A1E3PYD9_LIPST 
ID   A0A1E3PYD9_LIPST        Unreviewed;      1067 AA.
AC   A0A1E3PYD9;
DT   18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT   18-JAN-2017, sequence version 1.
DT   24-JAN-2024, entry version 32.
DE   RecName: Full=Upf1 domain-containing protein {ECO:0000259|PROSITE:PS51997};
GN   ORFNames=LIPSTDRAFT_65451 {ECO:0000313|EMBL:ODQ70350.1};
OS   Lipomyces starkeyi NRRL Y-11557.
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Lipomycetaceae; Lipomyces.
OX   NCBI_TaxID=675824 {ECO:0000313|EMBL:ODQ70350.1, ECO:0000313|Proteomes:UP000094385};
RN   [1] {ECO:0000313|EMBL:ODQ70350.1, ECO:0000313|Proteomes:UP000094385}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NRRL Y-11557 {ECO:0000313|EMBL:ODQ70350.1,
RC   ECO:0000313|Proteomes:UP000094385};
RX   PubMed=27535936; DOI=10.1073/pnas.1603941113;
RA   Riley R., Haridas S., Wolfe K.H., Lopes M.R., Hittinger C.T., Goeker M.,
RA   Salamov A.A., Wisecaver J.H., Long T.M., Calvey C.H., Aerts A.L.,
RA   Barry K.W., Choi C., Clum A., Coughlan A.Y., Deshpande S., Douglass A.P.,
RA   Hanson S.J., Klenk H.-P., LaButti K.M., Lapidus A., Lindquist E.A.,
RA   Lipzen A.M., Meier-Kolthoff J.P., Ohm R.A., Otillar R.P., Pangilinan J.L.,
RA   Peng Y., Rokas A., Rosa C.A., Scheuner C., Sibirny A.A., Slot J.C.,
RA   Stielow J.B., Sun H., Kurtzman C.P., Blackwell M., Grigoriev I.V.,
RA   Jeffries T.W.;
RT   "Comparative genomics of biotechnologically important yeasts.";
RL   Proc. Natl. Acad. Sci. U.S.A. 113:9882-9887(2016).
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC   -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC       {ECO:0000256|ARBA:ARBA00007913}.
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DR   EMBL; KV454300; ODQ70350.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1E3PYD9; -.
DR   STRING; 675824.A0A1E3PYD9; -.
DR   OrthoDB; 170190at2759; -.
DR   Proteomes; UP000094385; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR   CDD; cd21407; 1B_UPF1-like; 1.
DR   CDD; cd18039; DEXXQc_UPF1; 1.
DR   CDD; cd18808; SF1_C_Upf1; 1.
DR   CDD; cd21400; ZBD_UPF1-like; 1.
DR   Gene3D; 2.40.30.230; -; 1.
DR   Gene3D; 6.10.140.1240; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR045055; DNA2/NAM7-like.
DR   InterPro; IPR041679; DNA2/NAM7-like_C.
DR   InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR047187; SF1_C_Upf1.
DR   InterPro; IPR040812; UPF1_1B_dom.
DR   InterPro; IPR018999; UPF1_CH/ZBD.
DR   PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR   PANTHER; PTHR10887:SF364; REGULATOR OF NONSENSE TRANSCRIPTS 1; 1.
DR   Pfam; PF13086; AAA_11; 1.
DR   Pfam; PF13087; AAA_12; 1.
DR   Pfam; PF18141; UPF1_1B_dom; 1.
DR   Pfam; PF09416; UPF1_Zn_bind; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS51997; UPF1_CH_RICH; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW   ProRule:PRU01341}; Reference proteome {ECO:0000313|Proteomes:UP000094385};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU01341};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU01341}.
FT   DOMAIN          93..250
FT                   /note="Upf1"
FT                   /evidence="ECO:0000259|PROSITE:PS51997"
FT   REGION          27..65
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          73..92
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          101..133
FT                   /note="C3H"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT   REGION          115..143
FT                   /note="CC/SHH/C"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT   REGION          161..191
FT                   /note="C4"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT   REGION          904..928
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        905..928
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1067 AA;  117896 MW;  D8DB8A0C309FDEBE CRC64;
     MDAFTHLGQQ FDSASYVDTS SVISDMAPYR RRRQHNKRRA ANDDSGANTS DSGEDDDIES
     TIDGTLSLAS VPIDDGHLRR TTDEEDEGED DEVKELPDYA CAYCGIHSPS SVVRCAQCDK
     WFCNSRGNTS SSHIVNHLVR ARHKEVCLHA ESDLGATTLE CYNCGCKNVF LLGFIPAKSD
     TIVVVLCRQP CASASSSKDM TWDTSQWQPL IEDRSFLSWL ITVPTEAEQV KARNPTAAQI
     AKLEEIWKNN SNATINDLEN SAPDDEPVPV LLRYEDAYQY QRCFGPLVKI EADYDKKLKE
     SQSQDQLVVK WDIGLNNKHL ASFVLPKMDM GDVKLAVGDE MRLRYNGDIR SKWEGVGYVI
     KIANNISDEI TLELRRNDKS VPSDCTLGFS VDYVWKATSF DRMQLALKTF AINEMSVSGY
     IYHKLLGHEV APVVLKTAMP KQFAAPNLPD LNVSQVHAVK SVLQKHISII QGPPGTGKTV
     TSATIVYHLA KMNPGQVLVT APSNVAVDQL TEKIHRTGLK TVRLTAKSRE DIESSVSFLA
     LHEQVRLNDT NIELQKLTQL KQELGELSSQ DEKKFKKLTR QAEREILTNA DVICCTCVGA
     GDPRLSKLKF RTVLIDESTQ AAEPECMIPL VMGCKQAVLV GDHKQLGPVI MNKKAARAGL
     HQSLFERLVL LGLAPIRLNV QYRMHPCLSE FPSNMFYEGS LQNGVTTDER LRKNVDFPWP
     IADTPMMFWS NLGQEEISAS GTSYLNRTEA SNVEKLVTRF FKAGIQPSQI GIITPYEGQR
     SYIVSSMQTN GSLRKELYKE VEVASVDAFQ GREKDYIILS CVRSNEHQGI GFLSDPRRLN
     VALTRAKYGL VVIGNPKVLS KQPMWHHLLM HYKEKGCLVE GPLNNLQVSM IQFAKPRMPY
     RGSPSSAGSY YQQQRQPPMS MRYGDLSRQQ QPDFDTGSVL GYIPDDVASL SGMPSSNYQA
     IFANGFNVMN HWPSLPGSSS VPGPHGSVPP GDITNGNASN GKFGAIGAGP AGGKSIGLSQ
     SDRLKQYVED DSASVYGGLG SVYSAIDDDA RSVSTAFASQ IGIGPYD
//
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