ID A0A1E4S542_CYBJN Unreviewed; 473 AA.
AC A0A1E4S542;
DT 18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT 18-JAN-2017, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ODV74646.1};
GN ORFNames=CYBJADRAFT_171659 {ECO:0000313|EMBL:ODV74646.1};
OS Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617
OS / NBRC 0987 / NRRL Y-1542) (Torula yeast) (Candida utilis).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Phaffomycetaceae; Cyberlindnera.
OX NCBI_TaxID=983966 {ECO:0000313|EMBL:ODV74646.1, ECO:0000313|Proteomes:UP000094389};
RN [1] {ECO:0000313|EMBL:ODV74646.1, ECO:0000313|Proteomes:UP000094389}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 /
RC NRRL Y-1542 {ECO:0000313|Proteomes:UP000094389};
RX PubMed=27535936; DOI=10.1073/pnas.1603941113;
RA Riley R., Haridas S., Wolfe K.H., Lopes M.R., Hittinger C.T., Goeker M.,
RA Salamov A.A., Wisecaver J.H., Long T.M., Calvey C.H., Aerts A.L.,
RA Barry K.W., Choi C., Clum A., Coughlan A.Y., Deshpande S., Douglass A.P.,
RA Hanson S.J., Klenk H.-P., LaButti K.M., Lapidus A., Lindquist E.A.,
RA Lipzen A.M., Meier-Kolthoff J.P., Ohm R.A., Otillar R.P., Pangilinan J.L.,
RA Peng Y., Rokas A., Rosa C.A., Scheuner C., Sibirny A.A., Slot J.C.,
RA Stielow J.B., Sun H., Kurtzman C.P., Blackwell M., Grigoriev I.V.,
RA Jeffries T.W.;
RT "Comparative genomics of biotechnologically important yeasts.";
RL Proc. Natl. Acad. Sci. U.S.A. 113:9882-9887(2016).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TFIIF beta subunit family.
CC {ECO:0000256|ARBA:ARBA00009543}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL38 family.
CC {ECO:0000256|ARBA:ARBA00007803, ECO:0000256|RuleBase:RU003445}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; KV453927; ODV74646.1; -; Genomic_DNA.
DR RefSeq; XP_020071685.1; XM_020216245.1.
DR AlphaFoldDB; A0A1E4S542; -.
DR STRING; 983966.A0A1E4S542; -.
DR GeneID; 30990641; -.
DR OMA; FERWQYW; -.
DR OrthoDB; 6611at2759; -.
DR Proteomes; UP000094389; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd07980; TFIIF_beta; 1.
DR Gene3D; 3.30.720.90; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR002675; Ribosomal_eL38.
DR InterPro; IPR038464; Ribosomal_eL38_sf.
DR InterPro; IPR003196; TFIIF_beta.
DR InterPro; IPR040450; TFIIF_beta_HTH.
DR InterPro; IPR040504; TFIIF_beta_N.
DR InterPro; IPR011039; TFIIF_interaction.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10445; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2; 1.
DR PANTHER; PTHR10445:SF0; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2; 1.
DR Pfam; PF01781; Ribosomal_L38e; 1.
DR Pfam; PF02270; TFIIF_beta; 1.
DR Pfam; PF17683; TFIIF_beta_N; 1.
DR SUPFAM; SSF50916; Rap30/74 interaction domains; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000094389};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274,
KW ECO:0000256|RuleBase:RU003445};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980,
KW ECO:0000256|RuleBase:RU003445};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 67..232
FT /note="TFIIF beta subunit N-terminal"
FT /evidence="ECO:0000259|Pfam:PF17683"
FT DOMAIN 299..363
FT /note="TFIIF beta subunit HTH"
FT /evidence="ECO:0000259|Pfam:PF02270"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..182
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 374..394
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 473 AA; 54761 MW; 06EE029C82018D17 CRC64;
MSVEPKTKKK DAPAEPQLTK EQEILIQQQN NDNSDDEEFL SDGAEVVDAN DATQIAESLN
LDMKGIDQQV WLVRVPRFLA ERWRDHGSLK GQELGKVKIR RDLPLDQRGV AKLVLNSDST
NSEIPHNYDL QLTRAQVENQ YVFTEQNLQR FTERDDSKTE LDFTKKNPKK EEDMTKEERE
KHKRIQIAMK RRRRFNKFKN RDGSEKVLPF VKTIPKKTAL VGTVVHEAQI VPSLKDPNYS
KIIAQRSQLM KEEPRPSVTL LQEHSGVSLS NAGLTLRTDT SSFLKPSIEK KNKNDGRAIR
MPQKDLFDLL FKLFDQYDYW SLKGLKERTK QPEAYLKENL EQVAVLIKRG PYALKYTLKK
EFKELKDQER AERLGELAKD NEADEEEDNE EDVEMEDREI KDIKKFLELT RRADVKSASI
KVNKKINAAG KVSKQTKFKV RGSRHLYTLI VADEDKAKKL QQALPSTLEV TQI
//
