ID A0A1E5TC71_9FLAO Unreviewed; 164 AA.
AC A0A1E5TC71;
DT 18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT 18-JAN-2017, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE SubName: Full=RNA polymerase {ECO:0000313|EMBL:OEK08939.1};
GN ORFNames=A8C32_13600 {ECO:0000313|EMBL:OEK08939.1};
OS Flavivirga aquatica.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Flavivirga.
OX NCBI_TaxID=1849968 {ECO:0000313|EMBL:OEK08939.1, ECO:0000313|Proteomes:UP000095713};
RN [1] {ECO:0000313|EMBL:OEK08939.1, ECO:0000313|Proteomes:UP000095713}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SK-16 {ECO:0000313|EMBL:OEK08939.1,
RC ECO:0000313|Proteomes:UP000095713};
RA Wong S.-K., Yoshizawa S., Nakajima Y., Ogura Y., Tetsuya H., Hamasaki K.;
RT "Draft Genome Sequence of Algibacter sp. Strain SK-16 Isolated from the
RT Surface Water of Aburatsubo Inlet.";
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OEK08939.1}.
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DR EMBL; MDJD01000014; OEK08939.1; -; Genomic_DNA.
DR RefSeq; WP_069829194.1; NZ_MDJD01000014.1.
DR AlphaFoldDB; A0A1E5TC71; -.
DR STRING; 1849968.A8C32_13600; -.
DR OrthoDB; 9780326at2; -.
DR Proteomes; UP000095713; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR PANTHER; PTHR43133:SF45; RNA POLYMERASE SIGMA FACTOR-RELATED; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000095713}.
FT DOMAIN 13..76
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 104..155
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
SQ SEQUENCE 164 AA; 19451 MW; 743D2C0B8147A1F9 CRC64;
MSNDFYTSSI LPYSGIIIKI CRAYTDSQED FEDYYQEVCL QIWRSKDKFR GDSKWSTWVY
RLSLNICLTL MKKKRKTHQY YSTDNIVQNE FTDDKTIFSD ENLNLLYEAI KQLSEVDRAV
ILLYLEEKPN KIIAEIIGTT PNNIGVRISR IKERLKKILN EKIN
//