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Database: UniProt
Entry: A0A1F5FPA5_9BACT
LinkDB: A0A1F5FPA5_9BACT
Original site: A0A1F5FPA5_9BACT 
ID   A0A1F5FPA5_9BACT        Unreviewed;       428 AA.
AC   A0A1F5FPA5;
DT   15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT   15-FEB-2017, sequence version 1.
DT   13-SEP-2023, entry version 17.
DE   RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE            Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN   Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN   ORFNames=A2572_01620 {ECO:0000313|EMBL:OGD81439.1};
OS   Candidatus Collierbacteria bacterium RIFOXYD1_FULL_40_9.
OC   Bacteria; Candidatus Collierbacteria.
OX   NCBI_TaxID=1817731 {ECO:0000313|EMBL:OGD81439.1, ECO:0000313|Proteomes:UP000179237};
RN   [1] {ECO:0000313|EMBL:OGD81439.1, ECO:0000313|Proteomes:UP000179237}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=27774985; DOI=10.1038/ncomms13219;
RA   Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA   Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA   Williams K.H., Hubbard S.S., Banfield J.F.;
RT   "Thousands of microbial genomes shed light on interconnected biogeochemical
RT   processes in an aquifer system.";
RL   Nat. Commun. 7:13219-13219(2016).
CC   -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC       {ECO:0000256|HAMAP-Rule:MF_00335}.
CC   -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC       Rule:MF_00335}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OGD81439.1}.
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DR   EMBL; MFAQ01000044; OGD81439.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1F5FPA5; -.
DR   Proteomes; UP000179237; Unassembled WGS sequence.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd00077; HDc; 1.
DR   CDD; cd22431; KH-I_RNaseY; 1.
DR   Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR   Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR   HAMAP; MF_00335; RNase_Y; 1.
DR   InterPro; IPR003607; HD/PDEase_dom.
DR   InterPro; IPR006674; HD_domain.
DR   InterPro; IPR006675; HDIG_dom.
DR   InterPro; IPR004087; KH_dom.
DR   InterPro; IPR004088; KH_dom_type_1.
DR   InterPro; IPR036612; KH_dom_type_1_sf.
DR   InterPro; IPR017705; Ribonuclease_Y.
DR   InterPro; IPR022711; RNase_Y_N.
DR   NCBIfam; TIGR00277; HDIG; 1.
DR   NCBIfam; TIGR03319; RNase_Y; 1.
DR   PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR   PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR   Pfam; PF01966; HD; 1.
DR   Pfam; PF00013; KH_1; 1.
DR   Pfam; PF12072; RNase_Y_N; 1.
DR   SMART; SM00471; HDc; 1.
DR   SMART; SM00322; KH; 1.
DR   SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR   SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR   PROSITE; PS51831; HD; 1.
DR   PROSITE; PS50084; KH_TYPE_1; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW   Rule:MF_00335};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW   Rule:MF_00335}.
FT   DOMAIN          246..337
FT                   /note="HD"
FT                   /evidence="ECO:0000259|PROSITE:PS51831"
FT   COILED          5..60
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   428 AA;  48311 MW;  63E50EBD7CEBDEE2 CRC64;
     MEVRAKSLAQ KQQQLISEEN ELKKQKQALE NAQKQADELK ENLKTQADQM VKKLEKIASL
     TTEAAKKELL SQVEKRSSME IARVIKETEE MAKAQASDKA REILVDSMRS GATDYVAEYT
     ISTVPIPDEE TKGRIIGKDG RNIRIFEKVS GCDVSMDDSP DEVKLSSFDP VRREIARQTL
     IHLIKDGRIH PARIEEYFER AKRDVEQIMF QEGQKLCHAV GVYNMHRDIV STLGRFKFRT
     SYGQNMISHT LEETRIGIKI ASEIGANVDI VRMGCLLHDI GKVIDGEGNH IELGVNYLKK
     YNLPQPIVDC VAQHHEDEEF SSIESMLVYI SDAISGSRPG ARHENTEDYG KRIRQLEEIA
     RKHPEVDEAY AISAGREVRV IVNPQKASDA QLTILAQAIR DEIRDTMAFP GTVKVNVIRE
     TRAAEIAS
//
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