ID A0A1F5XGJ6_9BACT Unreviewed; 671 AA.
AC A0A1F5XGJ6;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=Transcription-repair coupling factor {ECO:0008006|Google:ProtNLM};
GN ORFNames=A3B19_00160 {ECO:0000313|EMBL:OGF86611.1};
OS Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_46_32.
OC Bacteria; Candidatus Giovannonibacteria.
OX NCBI_TaxID=1798353 {ECO:0000313|EMBL:OGF86611.1, ECO:0000313|Proteomes:UP000177346};
RN [1] {ECO:0000313|EMBL:OGF86611.1, ECO:0000313|Proteomes:UP000177346}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGF86611.1}.
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DR EMBL; MFIF01000014; OGF86611.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1F5XGJ6; -.
DR Proteomes; UP000177346; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR041471; UvrB_inter.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 3.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT DOMAIN 286..455
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 476..629
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 671 AA; 75877 MW; 16F3AFF0D5DB0B81 CRC64;
MLIFYQIFDR IQKLKKSLNK ILIAAVTPFF LEKGAGWFSE NFEEIEKNRR ESAFWARNTL
VFEVGERIKL SEFLRKIAEL WYVKVWEAEN RGEFSRRGGV VRVFPINSDK VFAIEFEGNV
ILDITPSIPL TLRGKQKRSS TLKVRGARGV MSPGDYIVHI DHGIGIFRGE KNDDFVIEYA
PPHDRPNSPD LLFVPKKEVK RIQPYLGFKK PEIHRLGTPM WQITKKKAKE DIVAYAKELL
KTLAERKTAY RAPYLEHGEL EEELIADFPY EYTTGQKSAL EEIFSDMSRQ EPMDRVLTGD
VGFGKTEIAL VAAFRAVLNG RQAAIMAPTT ILADQHSEVF KKRMEKYGVE TARLTRLESP
AKIKEILTKL ESGRIDIVIG THKILSASGW KNLGLLVIDE EQKFGVAQKE KFSAIGGPTS
GGKNIVTPDI LTLSATPIPR TLHIALSGLK RISSIETPPE GRTEIKTYVL PKNKKTMKEA
VDFELARGGQ IYFLANRIHK IPRLLEEIKN LKTRARIGIL HGRMDERAIV KTMRDFRAGK
IDILVSTTII ENGLDISNVN TLIVEDATKL GLSQAHQLRG RIGRGEKEAF AYFLYPAQKL
KERAAERLEA LERYSWLGAG LELARRDLEI RGAGNILGKA QSGVAYRIGL NLYFELLEEA
VAEAKIFDKN S
//
