ID A0A1F6BS12_9BACT Unreviewed; 368 AA.
AC A0A1F6BS12;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:OGG39731.1};
GN ORFNames=A3A21_00160 {ECO:0000313|EMBL:OGG39731.1};
OS Candidatus Jorgensenbacteria bacterium RIFCSPLOWO2_01_FULL_45_25b.
OC Bacteria; Candidatus Jorgensenbacteria.
OX NCBI_TaxID=1798471 {ECO:0000313|EMBL:OGG39731.1, ECO:0000313|Proteomes:UP000176996};
RN [1] {ECO:0000313|EMBL:OGG39731.1, ECO:0000313|Proteomes:UP000176996}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGG39731.1}.
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DR EMBL; MFKK01000037; OGG39731.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1F6BS12; -.
DR STRING; 1798471.A3A21_00160; -.
DR Proteomes; UP000176996; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 2.
DR Gene3D; 1.10.220.120; Sigma-70 factor, region 1.1; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR InterPro; IPR042189; RNA_pol_sigma_70_r1_1_sf.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF03979; Sigma70_r1_1; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 330..356
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
SQ SEQUENCE 368 AA; 42604 MW; F075A360FEED2EC5 CRC64;
MKLTKKDQLI KEYEERLNDL VYRGRARGFV TDAEVLSFFP RIEEHLPFLE MVYARLDREG
IRVKESSPLM KVIKDKEEIT AKELKDATRI EHDLPDAVQM YLKEIGRTAL LTSKDEKELA
KRAEGGNEEA RKRLIQANLR LVVSIAKRYV NRSPHLSILD LIQEGNIGLS RAVDKFDYRK
GFKFSTYATW WIRQAITRAL ADYSRTIRIP VHMVETITKY TQIKRHLMQE LGREPLPEEV
AAEMGVDVEK VHYIQKISQE VISLESPIGD DDEDSTLSDF IKDEQSLSPD QLASHALLKD
QIHEVMRDLT EREQKILAMR FGLEDGISHT LEEVGKVFGV TRERIRQIEA KALDKIRGNE
KVKKLEGY
//
