ID A0A1F6EJL9_9BACT Unreviewed; 509 AA.
AC A0A1F6EJL9;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 13-SEP-2023, entry version 20.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=A3A40_00740 {ECO:0000313|EMBL:OGG73807.1};
OS Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_54_20.
OC Bacteria; Candidatus Kaiserbacteria.
OX NCBI_TaxID=1798513 {ECO:0000313|EMBL:OGG73807.1, ECO:0000313|Proteomes:UP000178427};
RN [1] {ECO:0000313|EMBL:OGG73807.1, ECO:0000313|Proteomes:UP000178427}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGG73807.1}.
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DR EMBL; MFMA01000034; OGG73807.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1F6EJL9; -.
DR STRING; 1798513.A3A40_00740; -.
DR Proteomes; UP000178427; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 3.30.310.210; -; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 325..418
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 48..132
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 509 AA; 56742 MW; ABECD70FE6CDE37F CRC64;
MSTQLILILL VAAGAGGVAL GYFLRMIILL GKRGSMELQI RKMMLDAEER AKRVVAEAET
KAKDKEGQIT TELKERANEL KQVEERLVRK EELLDKRQTN VDMEQASLEK KNEALKVEKE
KVAELARAEQ EKLEKIAGLS AEEAKTGLIT SVEKQYEADL EHRMRKLEIS GNERLEQRAK
EILTTSVHRL GNSVVSDVLA TTISLPTDEI KGKIIGKEGR NIRQFERSTG VDVIIDDTPG
TITLSSYDPI RRQIARIALE NLILDGRIQP AKIEEMVKKA EEEINTIIKK KGAEAAYNAK
VQNLDPKLLM ILGRLYFRTS YGQNVLDHSV EVAHLAGMLA AELGANEATA RAGALFHDIG
KAVDHEVPGT HVEIGRRILQ KFGVDEAVIK AMQAHHEEYP YETPESMIVQ VADAISGGRP
GARRDSVENY IKRLEELEAI ANGEPGVEKS YAIAAGREIR VIVKPEAITD LEARKLARDI
ADKIEKELQY PGEIKVSVIR ETRVIEYAR
//
