ID A0A1G1FVI9_9BACT Unreviewed; 489 AA.
AC A0A1G1FVI9;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 13-SEP-2023, entry version 31.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:OGW35449.1};
GN ORFNames=A2010_02465 {ECO:0000313|EMBL:OGW35449.1};
OS Nitrospirae bacterium GWD2_57_9.
OC Bacteria; Nitrospirota.
OX NCBI_TaxID=1801701 {ECO:0000313|EMBL:OGW35449.1, ECO:0000313|Proteomes:UP000176220};
RN [1] {ECO:0000313|EMBL:OGW35449.1, ECO:0000313|Proteomes:UP000176220}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGW35449.1}.
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DR EMBL; MHED01000238; OGW35449.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G1FVI9; -.
DR Proteomes; UP000176220; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 122..310
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 326..487
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 44..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 489 AA; 55297 MW; B85CC6294C433DDC CRC64;
MEARLELKLS QKLIMTPQLQ QAIKLLQLSR LELVQSVAQE LTENPVLEEL SPESTEEPEG
EGDSAPEAAA PEPVAETAPA KENTEELKNL ELGPQWDEYL NEMGDGRDYG YAEADDKELP
SYDQTLTRLP SLSDHLLWQL HLSTSDPALV TGGEWIIGNL DDDGYLRATL EEVCQQSGVS
RHDMERALAL VQSFDPLGIA ARTLQECLLI QIRHLDAGGS LVEKIIQDHL PDLEKRKYAQ
IAKALSVTTQ EVMEASQIII HELEPKPGRP YMPSDTNYVT PDVYVIKVED RYIVQLNDEG
LPRVRINPYY RKLLSHKDSV DKVTKEYIEE RLRSAQWLIK GMEQRSKTIY RVAESIVAFQ
RDFLDQGISQ LKPMVLKDVA EDIGMHESTI SRVTTNKYMH TPQGIFPMKF FFTTGFSIHA
GGPGVEVSSL TVKDVIQKMI REEDPATPLK DQQIVDSLKT KGIEIARRTV AKYREELRIP
PTSVRRRIG
//
