ID A0A1G1WJI1_9BACT Unreviewed; 206 AA.
AC A0A1G1WJI1;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 08-NOV-2023, entry version 14.
DE RecName: Full=YkuD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=A2Z42_02150 {ECO:0000313|EMBL:OGY27866.1};
OS Candidatus Woykebacteria bacterium RBG_19FT_COMBO_43_10.
OC Bacteria; Candidatus Woykebacteria.
OX NCBI_TaxID=1802598 {ECO:0000313|EMBL:OGY27866.1, ECO:0000313|Proteomes:UP000176645};
RN [1] {ECO:0000313|EMBL:OGY27866.1, ECO:0000313|Proteomes:UP000176645}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGY27866.1}.
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DR EMBL; MHCU01000019; OGY27866.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G1WJI1; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000176645; Unassembled WGS sequence.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 2.30.30.40; SH3 Domains; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR003646; SH3-like_bac-type.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF2; L,D-TRANSPEPTIDASE YCIB-RELATED; 1.
DR Pfam; PF08239; SH3_3; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE 4: Predicted;
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 4..39
FT /note="SH3b"
FT /evidence="ECO:0000259|Pfam:PF08239"
FT DOMAIN 89..203
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
SQ SEQUENCE 206 AA; 23289 MW; A66A9BFB360DD2B3 CRC64;
MDNGVVVRAA PTSESQQVGT LGFGEEVKIL SVVNGQMWYN HNQYISPFGP FSDLADDWYE
IEPGKYVYSA FVFIPKEGEP PPSVSCENKW VEVDRANQTL HAFCDGVDIF QAPVGVGLPW
TPTPLGEYSV WTRIFNETMS GADYYVQNIL FTQYFTSAGH ALHLDWWHGD SYFGNQPTSH
GCVGLQIHNS QWIWLFGFTG MRVKIY
//