ID A0A1G2GAC0_9BACT Unreviewed; 681 AA.
AC A0A1G2GAC0;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=Transcription-repair coupling factor {ECO:0008006|Google:ProtNLM};
GN ORFNames=A3J54_00080 {ECO:0000313|EMBL:OGZ46848.1};
OS Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_02_FULL_45_13b.
OC Bacteria; Candidatus Ryanbacteria.
OX NCBI_TaxID=1802117 {ECO:0000313|EMBL:OGZ46848.1, ECO:0000313|Proteomes:UP000176576};
RN [1] {ECO:0000313|EMBL:OGZ46848.1, ECO:0000313|Proteomes:UP000176576}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OGZ46848.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; MHNN01000005; OGZ46848.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G2GAC0; -.
DR STRING; 1802117.A3J54_00080; -.
DR Proteomes; UP000176576; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR CDD; cd17991; DEXHc_TRCF; 1.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR041471; UvrB_inter.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 3.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT DOMAIN 299..460
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 481..636
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 681 AA; 77067 MW; 921A34F548F359F4 CRC64;
MQDAQHTEQL LIAGLHPHLL EKPVFWFQKR KKEILRARLV TPFWQHTTIV AHIGFHVKLS
ELLRMLHDIG YTRVQTVAHP GEYAADGGEV HVYPINEHAP WRIIFLGNTI ETIEQTRPKE
LITELSPLQK KFLEQNRLGL LKPGDYVVHM DHGIGIFRGL EEKNAKQYIS IEYAPASSTP
ATVKRSVRAL PERDSPGFAG LPDMLFVPQE LAKKVTPYIG FRTPRIHRLG TSLWNSIKKK
TKEDIIKFAK ELLEIYAKRE ISERPPYMPQ KDMEQSLAAS FAHEETPDQA QAVMEVLSDM
ESPRPLDRIV LADVGFGKTE VAVRASFRAV VNNRQVAILC PTTILADQHF ETFKERFSAF
PVSVERLSRL ERPGTQKSTL KNIARGVTDI VIGTHRLLSR DVTFPRLGLL IIDEEQRFGV
KQKEHIRTLK ETVDVLSLSA TPIPRTLHFA LSGLRSMSVI TTPPKNRVAP KTFVLPFGKQ
VIKNALEAEL ERGGQVYVLC NRIGKMPMMR DYIRDIIPDA RVSVIHGRMS ELQLITAMHE
FREQKSDILL ATTIIENGLD ISNANTLIVE DSSLIGLAQA HQLRGRIGRG AVQSYAFFLY
PSKKLKEKAQ RRLDALFDTQ YLGAGQDIAL RDMEIRGAGN VLGRDQSGRM NQIGMNLYCQ
MLEETVSTMR EVSPHPLPSH D
//
