ID A0A1G2U3Z2_9BACT Unreviewed; 346 AA.
AC A0A1G2U3Z2;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:OHB04223.1};
GN ORFNames=A3B14_02070 {ECO:0000313|EMBL:OHB04223.1};
OS Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_01_FULL_45_21.
OC Bacteria; Candidatus Zambryskibacteria.
OX NCBI_TaxID=1802761 {ECO:0000313|EMBL:OHB04223.1, ECO:0000313|Proteomes:UP000176800};
RN [1] {ECO:0000313|EMBL:OHB04223.1, ECO:0000313|Proteomes:UP000176800}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OHB04223.1}.
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DR EMBL; MHWE01000010; OHB04223.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G2U3Z2; -.
DR Proteomes; UP000176800; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 2.
DR Gene3D; 1.10.220.120; Sigma-70 factor, region 1.1; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR InterPro; IPR042189; RNA_pol_sigma_70_r1_1_sf.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF03979; Sigma70_r1_1; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 136..149
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
SQ SEQUENCE 346 AA; 39600 MW; 498D1AE00B70E7DB CRC64;
MSKGKERGFI TYDEILRQFP TVEEDILFLE DLYAQLAVSG IDVLEGGGLL EIPEEKEASK
KFEYGRSDSS YDSIQIYLKE IGQYPLITGG MEKELAKRIE AGDEEAKNLL ARANLRLVVS
IAKKYVGRSP DLTLLDLIQE GNLGLFKAVD KFDWTKGYKF STYATWWIRQ AITRALADQS
RTIRVPVHMV ETITKYKQVV RRLTQDLGRD PLPEEVATEM NLDVEKVYQI EKIDQSTVSL
ESPIGDDNDD GKSKLGDFLS DDKLLSPDQE SSRRIVADQV KEILNDLPIK ERQILEMRHG
LVDGITHTLE EVGKVFGVTR ERIRQIEAKA HEKIRQHEKI NRLRNY
//
