ID A0A1G2V8W8_9BACT Unreviewed; 353 AA.
AC A0A1G2V8W8;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=RNA polymerase sigma factor RpoD {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=A2544_02785 {ECO:0000313|EMBL:OHB18040.1};
OS Candidatus Zambryskibacteria bacterium RIFOXYD2_FULL_43_10.
OC Bacteria; Candidatus Zambryskibacteria.
OX NCBI_TaxID=1802782 {ECO:0000313|EMBL:OHB18040.1, ECO:0000313|Proteomes:UP000176868};
RN [1] {ECO:0000313|EMBL:OHB18040.1, ECO:0000313|Proteomes:UP000176868}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=27774985; DOI=10.1038/ncomms13219;
RA Anantharaman K., Brown C.T., Hug L.A., Sharon I., Castelle C.J.,
RA Probst A.J., Thomas B.C., Singh A., Wilkins M.J., Karaoz U., Brodie E.L.,
RA Williams K.H., Hubbard S.S., Banfield J.F.;
RT "Thousands of microbial genomes shed light on interconnected biogeochemical
RT processes in an aquifer system.";
RL Nat. Commun. 7:13219-13219(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OHB18040.1}.
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DR EMBL; MHWZ01000008; OHB18040.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G2V8W8; -.
DR STRING; 1802782.A2544_02785; -.
DR Proteomes; UP000176868; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.220.120; Sigma-70 factor, region 1.1; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR InterPro; IPR042189; RNA_pol_sigma_70_r1_1_sf.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF03979; Sigma70_r1_1; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 22..76
FT /note="RNA polymerase sigma factor 70 region 1.1"
FT /evidence="ECO:0000259|Pfam:PF03979"
FT DOMAIN 97..129
FT /note="RNA polymerase sigma-70 region 1.2"
FT /evidence="ECO:0000259|Pfam:PF00140"
FT DOMAIN 135..207
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 216..294
FT /note="RNA polymerase sigma-70 region 3"
FT /evidence="ECO:0000259|Pfam:PF04539"
FT DOMAIN 309..352
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:OHB18040.1"
FT NON_TER 353
FT /evidence="ECO:0000313|EMBL:OHB18040.1"
SQ SEQUENCE 353 AA; 40670 MW; D114A704E42B73CF CRC64;
INKKQKTKNR SLTKKKIDEV LKMERLTARG KERGFVTYGE ILKEFPTIET NIIFLDELYD
KLHALGVDIL EEGGLLEMPK EETDKHYTYS RGDSSYDSIQ MYLREIGQYP LIAGSMEKEL
AKRIEKGDED AKNLLMKANL RLVVSIAKKY ANRSPDLTLL DLIQEGNLGL HKAVEKFDWT
KGFKFSTYAT WWIRQAITRA LADQSRTIRV PVHMVETIAK YKQVVRRLTQ DLGREPLQEE
IALEMNLDVE KIYQIEKIDQ STVSLESPVG NDGEDDKSKL GDFLADDKIL SPDQDSSRRI
ISDQVREILG DLPPKERKIL EMRHGLLDGY THTLEEVGRV FGVTRERIRQ IEA
//
