ID A0A1G5SRU4_9SPHN Unreviewed; 573 AA.
AC A0A1G5SRU4;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 24-JAN-2024, entry version 17.
DE RecName: Full=30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111};
GN ORFNames=SAMN03159340_00089 {ECO:0000313|EMBL:SDA11015.1};
OS Sphingomonas sp. NFR15.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingomonas.
OX NCBI_TaxID=1566282 {ECO:0000313|EMBL:SDA11015.1, ECO:0000313|Proteomes:UP000199327};
RN [1] {ECO:0000313|Proteomes:UP000199327}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NFR15 {ECO:0000313|Proteomes:UP000199327};
RA Varghese N., Submissions S.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Binds mRNA; thus facilitating recognition of the initiation
CC point. It is needed to translate mRNA with a short Shine-Dalgarno (SD)
CC purine-rich sequence. {ECO:0000256|ARBA:ARBA00025604,
CC ECO:0000256|PIRNR:PIRNR002111}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bS1 family.
CC {ECO:0000256|ARBA:ARBA00006767, ECO:0000256|PIRNR:PIRNR002111}.
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DR EMBL; FMWX01000001; SDA11015.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G5SRU4; -.
DR STRING; 1566282.SAMN03159340_00089; -.
DR OrthoDB; 9804077at2; -.
DR Proteomes; UP000199327; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd05687; S1_RPS1_repeat_ec1_hs1; 1.
DR CDD; cd04465; S1_RPS1_repeat_ec2_hs2; 1.
DR CDD; cd05688; S1_RPS1_repeat_ec3; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 5.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR000110; Ribosomal_bS1.
DR InterPro; IPR035104; Ribosomal_protein_S1-like.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00717; rpsA; 1.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF7; 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC; 1.
DR Pfam; PF00575; S1; 6.
DR PIRSF; PIRSF002111; RpsA; 1.
DR PRINTS; PR00681; RIBOSOMALS1.
DR SMART; SM00316; S1; 6.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 6.
DR PROSITE; PS50126; S1; 6.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000199327};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Ribonucleoprotein {ECO:0000256|PIRNR:PIRNR002111};
KW Ribosomal protein {ECO:0000256|PIRNR:PIRNR002111,
KW ECO:0000313|EMBL:SDA11015.1}; RNA-binding {ECO:0000256|PIRNR:PIRNR002111}.
FT DOMAIN 28..94
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 112..178
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 199..267
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 284..354
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 371..441
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 466..535
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 573 AA; 61792 MW; 4453DD81F504E297 CRC64;
MATMASPTRD DFAALLEQTL GGADSFEGRV VKGTVTGIEN DLAVIDVGLK SEGRVPLREF
AAPGQKADLK VGDEVEVYVD RVENVHGEAM LSRDRARREA AWDTLETEFA KTARVEGVIF
GRVKGGFTVD LNGAVAFLPG SQVDIRPVRD VTPLMDIPQP FQILKMDRKR GNIVVSRRAI
LEETRAEQRS GLILSLAEGQ IIDGVVKNIT DYGAFVDLGG IDGLLHVTDL SYKRVGHPSE
VLNIGDTVKV QIIRINKDTQ RISLGMKQLE SDPWDGASAK YPVGAKLTGR VTNITEYGAF
VELEAGIEGL VHVSEMSWTK KNVHPGKIVS TSQEVDVVVL EVDPDKRRIS LGLKQAQANP
WEAFLEAHPI GSTVEGEVKN ATEFGLFIGL DNDVDGMVHM SDIAWGVSGE DALNLHRKGE
VVQAVVLDID AEKERISLGM KQLERGAPAS GGAAAGGGAG SGLNKNAIVT VTVLEVRDAG
LEVQVGDDGA TGFIKRTDLG RDRDEQRPER FQVGQKFDAM VTGFDRSKKP TFSVKAMQIS
EEKQAVAQYG SSDSGASLGD ILGEALKARN EKR
//
