ID A0A1G8UKP1_9GAMM Unreviewed; 660 AA.
AC A0A1G8UKP1;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE RecName: Full=exoribonuclease II {ECO:0000256|ARBA:ARBA00012163};
DE EC=3.1.13.1 {ECO:0000256|ARBA:ARBA00012163};
GN ORFNames=SAMN05216212_0172 {ECO:0000313|EMBL:SDJ54388.1};
OS Microbulbifer yueqingensis.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Cellvibrionales;
OC Microbulbiferaceae; Microbulbifer.
OX NCBI_TaxID=658219 {ECO:0000313|EMBL:SDJ54388.1, ECO:0000313|Proteomes:UP000199305};
RN [1] {ECO:0000313|EMBL:SDJ54388.1, ECO:0000313|Proteomes:UP000199305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CGMCC 1.10658 {ECO:0000313|EMBL:SDJ54388.1,
RC ECO:0000313|Proteomes:UP000199305};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Exonucleolytic cleavage in the 3'- to 5'-direction to yield
CC nucleoside 5'-phosphates.; EC=3.1.13.1;
CC Evidence={ECO:0000256|ARBA:ARBA00001849};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; FNFH01000001; SDJ54388.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G8UKP1; -.
DR STRING; 658219.SAMN05216212_0172; -.
DR OrthoDB; 9764149at2; -.
DR Proteomes; UP000199305; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-EC.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0016070; P:RNA metabolic process; IEA:InterPro.
DR CDD; cd00164; S1_like; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 2.
DR InterPro; IPR040476; CSD2.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR013223; RNase_B_OB_dom.
DR InterPro; IPR001900; RNase_II/R.
DR InterPro; IPR004476; RNase_II/RNase_R.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00358; 3_prime_RNase; 1.
DR PANTHER; PTHR23355:SF37; EXORIBONUCLEASE 2; 1.
DR PANTHER; PTHR23355; RIBONUCLEASE; 1.
DR Pfam; PF17876; CSD2; 1.
DR Pfam; PF08206; OB_RNB; 1.
DR Pfam; PF00773; RNB; 1.
DR Pfam; PF00575; S1; 1.
DR SMART; SM00955; RNB; 1.
DR SMART; SM00316; S1; 2.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 3.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722}.
FT DOMAIN 564..643
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 660 AA; 73501 MW; BCFD05CA3874A569 CRC64;
MLNPDALKQL SQLKTDIRST KEFAEGRVRG SNGKFGFVML DDGREAFLPP PEMERVFPGD
RVRVCLNEED KGKLSAELDD LLESELKYLV GQYVQRGQGH FVQPSENGLT RWIFLPPKAR
GKAQPGEFIA CKVIRHPFRD GKAQAKVVEV IGKPEMPGIE HAFVVAQHRL PEKFSDAALK
QAAEIREKLS EVAASRKDES DMGFVTIDAE STRDMDDAIA ATSREGGWTL HIAVADPSSL
IEPGSPLDKE AFQRAHSQYL PGETLPMLPR ELCEDSFSLL PGELRPALVL HIDIDSDGSL
GDSRYEFAAV RSRHKLSYTQ VSRFIDGEDD AVPPEQHDSM RALAELSKAR AAFRASHSLI
MEDRPDYEIH LDERRKIARI EKQVRNVAQR MIEEAMLATN IAVGEKLAAM QQGCFSVHLG
FRDERLGEVK SLLKETLPEH AEKDLHQLDN YLALVKYLET HHEPKMQNLL AVLKRMLRPG
QLANTPGAHL GLGLAAYATV TSPIRKYNDL HNHRVLRAAE EGQRAAALDD SQVETLQDSL
VRGRQANRAL EQWLYCQFMQ DKVGNEFAGK ITLVNGAGLG VRLDDYGIDG FVRLNTDKKN
LPAFDGKHLV LTHNDHSYHL EQPVTVKVSS VDVDKRRIAL ELLSGGTPLA EVPAAAEASE
//
