ID A0A1G8YQF6_9CLOT Unreviewed; 280 AA.
AC A0A1G8YQF6;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE SubName: Full=Putative peptidoglycan binding domain-containing protein {ECO:0000313|EMBL:SDK04664.1};
GN ORFNames=SAMN05660472_00606 {ECO:0000313|EMBL:SDK04664.1};
OS Natronincola ferrireducens.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Natronincola.
OX NCBI_TaxID=393762 {ECO:0000313|EMBL:SDK04664.1, ECO:0000313|Proteomes:UP000198718};
RN [1] {ECO:0000313|EMBL:SDK04664.1, ECO:0000313|Proteomes:UP000198718}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 18346 {ECO:0000313|EMBL:SDK04664.1,
RC ECO:0000313|Proteomes:UP000198718};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; FNFP01000001; SDK04664.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1G8YQF6; -.
DR STRING; 393762.SAMN05660472_00606; -.
DR OrthoDB; 9787225at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000198718; Unassembled WGS sequence.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 2.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR002477; Peptidoglycan-bd-like.
DR InterPro; IPR036365; PGBD-like_sf.
DR InterPro; IPR036366; PGBDSf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF24; L,D-TRANSPEPTIDASE ERFK_SRFK-RELATED; 1.
DR Pfam; PF01471; PG_binding_1; 2.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF47090; PGBD-like; 2.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000198718};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 17..72
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
FT DOMAIN 87..195
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT DOMAIN 212..266
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
SQ SEQUENCE 280 AA; 31163 MW; 0721BBBD30121E74 CRC64;
MKIASRYLRL LEPYMFGPDV MHVEERLTTL GFYENTIDGI YDEQLYESVR AYQGDFGLTP
DGIVGPDTWN AIGLDPEKKY PLPEEGYSIE IDLEQKVLTL KQFSETIATY PVAVGKPSTP
TPVGDWQIIQ KTRNPGGAFG TRWMRMNVPW GGYGIHGTNA PESIGTAASH GCVRMFNEDV
NGLYDIVPLG TPVKITGEVF TGRVLAIGID PGPDVFQVKT ILTELGYYDG EIDGIYNEET
AEAVRNFQKD FNLVADGTVG VDTYDELQLA RDQYLEDREP
//