ID   A0A1G9LRT6_9SPHI        Unreviewed;       551 AA.
AC   A0A1G9LRT6;
DT   22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT   22-NOV-2017, sequence version 1.
DT   24-JAN-2024, entry version 19.
DE   SubName: Full=Murein L,D-transpeptidase YcbB/YkuD {ECO:0000313|EMBL:SDL64497.1};
GN   ORFNames=SAMN05421813_10164 {ECO:0000313|EMBL:SDL64497.1};
OS   Daejeonella rubra.
OC   Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC   Sphingobacteriaceae; Daejeonella.
OX   NCBI_TaxID=990371 {ECO:0000313|EMBL:SDL64497.1, ECO:0000313|Proteomes:UP000199226};
RN   [1] {ECO:0000313|Proteomes:UP000199226}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 24536 {ECO:0000313|Proteomes:UP000199226};
RA   Varghese N., Submissions S.;
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
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DR   EMBL; FNHH01000001; SDL64497.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1G9LRT6; -.
DR   STRING; 990371.SAMN05421813_10164; -.
DR   OrthoDB; 9778545at2; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000199226; Unassembled WGS sequence.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR045380; LD_TPept_scaffold_dom.
DR   InterPro; IPR002477; Peptidoglycan-bd-like.
DR   InterPro; IPR036365; PGBD-like_sf.
DR   InterPro; IPR036366; PGBDSf.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR   PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR   Pfam; PF01471; PG_binding_1; 1.
DR   Pfam; PF20142; Scaffold; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR   SUPFAM; SSF47090; PGBD-like; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000199226};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          84..223
FT                   /note="L,D-transpeptidase scaffold"
FT                   /evidence="ECO:0000259|Pfam:PF20142"
FT   DOMAIN          252..305
FT                   /note="Peptidoglycan binding-like"
FT                   /evidence="ECO:0000259|Pfam:PF01471"
FT   DOMAIN          335..486
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
SQ   SEQUENCE   551 AA;  63759 MW;  7878181BD65DEC80 CRC64;
     MNFRFSAFII VSFFMILLPF QGCGQKKQDA GKVSADSLID RDQNVWNRSI PGSFSSQTKS
     RFDSLEIRDF IRQYPKFSKF EESIMTFYSH RNMAFAWFDA EGLIEHADNL TDRIRNLKSE
     GVNKELPYFQ SLDSLIYSSD SDQFSHFQKI KLELILTAQY FAFAESVWGG IDAKFLKEID
     WNLPRKKVSF EEYLDSILES PPGNFKEVKA PVNRQHDLLK NFLNQYRVQA AKGHWLEIKA
     GSKSFELGDS SEVIKQVKLR LFELGDLKDS KTDQIFDLDL QNAVKQFQTR HGLKDDGVIG
     KGTISELNVP YEQRIKQLLV NMERSRWIPV SVSTDYLVVN IPEFRLHVYS ADQLVWSCNV
     VVGKAIHKTV IFSGDLKYIA FSPYWNVPQS IVKNELLKDM RRDKNYLQKH NMEITGYRDG
     LPEIRQKPGP SNSLGLVKFL FPNSYNIYLH DTPSKSLFNE SARAFSHGCI RISEPFKLAQ
     FLLRNDPSWD DTSINAAMNA GVERIISLKE KTPVFIVYFT AFVDKDGLIN FRKDIYDRDE
     RLADMIMNFQ P
//