ID A0A1H0UZ38_9CLOT Unreviewed; 459 AA.
AC A0A1H0UZ38;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SDP71522.1};
GN ORFNames=SAMN04488529_11360 {ECO:0000313|EMBL:SDP71522.1};
OS Clostridium gasigenes.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=94869 {ECO:0000313|EMBL:SDP71522.1, ECO:0000313|Proteomes:UP000198597};
RN [1] {ECO:0000313|EMBL:SDP71522.1, ECO:0000313|Proteomes:UP000198597}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 12272 {ECO:0000313|EMBL:SDP71522.1,
RC ECO:0000313|Proteomes:UP000198597};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; FNJM01000013; SDP71522.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1H0UZ38; -.
DR STRING; 94869.SAMN04488529_11360; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000198597; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000198597};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 98..284
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 298..458
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 459 AA; 52968 MW; 5D8F949F946C483C CRC64;
MKLDFNLNLS QEQRLVMTQQ MQLSIKLLQM SSCDLREYID NEFTENPMLE GNFDTVQEEG
NYQDKIDYKE MIKYLEFDNY GSQNYGSYDS DNDVSPFNFI TKKQSLTEYL HEQVLECNED
EFIKTIVGYM IENLDSRGYL SFPLKDICRE LEISEKLGKE ALDVLQDLEP DGIGAKDLKE
CLKIQLIKRG ILDENLEDII DNYLDSIADN KYINISKALK ITPKEAQSCG DLIKTLEPKP
SRGFYTGEEV KFIIPDASIR KIDGEYFVIM NEGALPRLSI NSLYKQIINN KGDKQAEEYV
KNKLNSAMFL IKSIEQRKGT LLRILEKVIK KQIEYFDKGQ KYLKPMSLKE MAEELEVHES
TISRAVRDKY VLTSMGTIKI KDIFTTGLTS NENGGEDVAV VNIKKKIKTL VDEENRIKPL
SDQVICNELN KKGLNISRRT VAKYREELGI RSSSKRKRI
//
