ID A0A1H2GUV7_9FLAO Unreviewed; 485 AA.
AC A0A1H2GUV7;
DT 18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT 18-JAN-2017, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SDU23353.1};
GN ORFNames=SAMN04487762_2597 {ECO:0000313|EMBL:SDU23353.1};
OS Polaribacter sp. Hel1_33_78.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae.
OX NCBI_TaxID=1336804 {ECO:0000313|EMBL:SDU23353.1, ECO:0000313|Proteomes:UP000198843};
RN [1] {ECO:0000313|EMBL:SDU23353.1, ECO:0000313|Proteomes:UP000198843}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hel1_33_78 {ECO:0000313|EMBL:SDU23353.1,
RC ECO:0000313|Proteomes:UP000198843};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; LT629794; SDU23353.1; -; Genomic_DNA.
DR RefSeq; WP_036782954.1; NZ_LT629794.1.
DR AlphaFoldDB; A0A1H2GUV7; -.
DR STRING; 1336804.SAMN04487762_2597; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000198843; Chromosome i.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000198843};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 111..303
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 326..483
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 485 AA; 55769 MW; 524B0C75DF1A3C15 CRC64;
MLKQSLQYKL LQKLSPQQIQ LMKLIQLPTQ AFEERLKQEI EENPALDTGK EESDAIDDDL
SNEYEDAGNE KIEADDINID EYLSDDDIPS YKTQANNYSA DDEEKNVPYA AGTTFHQSLK
NQLNTFRLDE EERVIAEFLV GSIDDSGYIR REIIDLVDDL AFTANVFTTE EKVITILTKV
VHSLDPVGVG ARDLKECLII QLKAKEKNKI RSLSIGILED AFDHFVKKHY QKLQEKFNIS
EEILKEVNTE ISKLNPKPGS SYAGNNKIAE QIVPDFSIKI LEGELDLTLN SRNAPELHIS
REYNNMLKGY QESTVKSKSQ KDAVFFIKQK LDSAKWFIDA IKQRQQTLLI TMNTIMQYQH
DYFLTGDERK LKPMILKDIA DKINMDVSTV SRVANSKFVS TPYGTKLIKE FFSESMKNDQ
GEDVSTKEIK KILETVIHEE DKRKPLTDEK LSVILKEKGY PIARRTIAKY REQLELPVAR
LRKEI
//
