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Database: UniProt
Entry: A0A1H4BNA4_9BACT
LinkDB: A0A1H4BNA4_9BACT
Original site: A0A1H4BNA4_9BACT 
ID   A0A1H4BNA4_9BACT        Unreviewed;       479 AA.
AC   A0A1H4BNA4;
DT   22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT   22-NOV-2017, sequence version 1.
DT   24-JAN-2024, entry version 18.
DE   SubName: Full=23S rRNA (Uracil1939-C5)-methyltransferase {ECO:0000313|EMBL:SEA49282.1};
GN   ORFNames=SAMN04487851_10755 {ECO:0000313|EMBL:SEA49282.1};
OS   Prevotella sp. tc2-28.
OC   Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC   Prevotella.
OX   NCBI_TaxID=1761888 {ECO:0000313|EMBL:SEA49282.1, ECO:0000313|Proteomes:UP000199625};
RN   [1] {ECO:0000313|EMBL:SEA49282.1, ECO:0000313|Proteomes:UP000199625}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TC2-28 {ECO:0000313|EMBL:SEA49282.1,
RC   ECO:0000313|Proteomes:UP000199625};
RA   de Groot N.N.;
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase
CC       superfamily. RNA M5U methyltransferase family. {ECO:0000256|PROSITE-
CC       ProRule:PRU01024}.
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DR   EMBL; FNRE01000007; SEA49282.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1H4BNA4; -.
DR   STRING; 1761888.SAMN04487851_10755; -.
DR   OrthoDB; 9804590at2; -.
DR   Proteomes; UP000199625; Unassembled WGS sequence.
DR   GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR   GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:InterPro.
DR   GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR   GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR   CDD; cd02440; AdoMet_MTases; 1.
DR   Gene3D; 2.40.50.1070; -; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR   InterPro; IPR030390; MeTrfase_TrmA_AS.
DR   InterPro; IPR030391; MeTrfase_TrmA_CS.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR029063; SAM-dependent_MTases_sf.
DR   InterPro; IPR002792; TRAM_dom.
DR   InterPro; IPR010280; U5_MeTrfase_fam.
DR   NCBIfam; TIGR00479; rumA; 1.
DR   PANTHER; PTHR11061:SF48; 23S RRNA (URACIL(747)-C(5))-METHYLTRANSFERASE RLMC; 1.
DR   PANTHER; PTHR11061; RNA M5U METHYLTRANSFERASE; 1.
DR   Pfam; PF05958; tRNA_U5-meth_tr; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR   PROSITE; PS51687; SAM_MT_RNA_M5U; 1.
DR   PROSITE; PS50926; TRAM; 1.
DR   PROSITE; PS01230; TRMA_1; 1.
DR   PROSITE; PS01231; TRMA_2; 1.
PE   3: Inferred from homology;
KW   Methyltransferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000256|PROSITE-
KW   ProRule:PRU01024}; Reference proteome {ECO:0000313|Proteomes:UP000199625};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW   ECO:0000256|PROSITE-ProRule:PRU01024};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PROSITE-
KW   ProRule:PRU01024}.
FT   DOMAIN          4..63
FT                   /note="TRAM"
FT                   /evidence="ECO:0000259|PROSITE:PS50926"
FT   ACT_SITE        437
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU10015"
FT   ACT_SITE        437
FT                   /note="Nucleophile"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         304
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         340
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         361
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         410
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
SQ   SEQUENCE   479 AA;  54672 MW;  93325E224CF9A8E7 CRC64;
     MTRKKKPLPL LEHITITDYA AEGKSVARVD DMVVFVPWAV PGDVVDLQVR RKKHSFMEAE
     VVRYHEYSKV RTQPFCQHFG VCGGCKWQQL PYEEQLKMKQ QQVYDQLTRI GKVKLPAFRP
     ILGSVKTKEY RNKLDFGCAN KRWLTTEQLK DDTLVKDTPA IGFHITGAFD KILPIEKCWL
     MDDLQNQIRN EVRDYAVEHG LSFFDLRQQV GLLRDVIVRN SASGEWMVII QFHFDETGGE
     QEAQGLLQHI ADKFPQITSL LYLDNQKCND TIGDQDIRVF KGKDHIFELM EDLKFKVGPK
     SFYQTNTEQA YHLYSVAREF AFGNLSSLSS DTSPLVYDLY TGTGTIANFV AKQARQVIGI
     EYVPEAIEDA KINSEINGIK NTLFYAGDMK DILTDDFINA HGRPDVIITD PPRAGMHPDV
     IKTILNAAPK RIVYVSCNPA TQARDLQALD EKYQVVEVQP VDMFPHTPHV ENVVLLTQK
//
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