ID A0A1H5RPC9_9FIRM Unreviewed; 530 AA.
AC A0A1H5RPC9;
DT 18-JAN-2017, integrated into UniProtKB/TrEMBL.
DT 18-JAN-2017, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=SAMN05216537_101207 {ECO:0000313|EMBL:SEF40232.1};
OS Lachnospira multipara.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae;
OC Lachnospira.
OX NCBI_TaxID=28051 {ECO:0000313|EMBL:SEF40232.1, ECO:0000313|Proteomes:UP000236726};
RN [1] {ECO:0000313|EMBL:SEF40232.1, ECO:0000313|Proteomes:UP000236726}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=D15d {ECO:0000313|EMBL:SEF40232.1,
RC ECO:0000313|Proteomes:UP000236726};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP-Rule:MF_00335};
CC Single-pass membrane protein {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
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DR EMBL; FNUL01000001; SEF40232.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1H5RPC9; -.
DR STRING; 1410661.GCA_000702205_00247; -.
DR Proteomes; UP000236726; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Membrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW Reference proteome {ECO:0000313|Proteomes:UP000236726};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}; Transmembrane {ECO:0000256|HAMAP-Rule:MF_00335};
KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00335}.
FT TRANSMEM 6..24
FT /note="Helical"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00335"
FT DOMAIN 346..439
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 33..163
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 530 AA; 59515 MW; 1F6523866528991B CRC64;
MDPILIVVFA VLVVIVAIVA YILGNRSKIS NANKKAREIV DEAIKERQAA KTAKDAAIAD
REAAIREKEA AKKEALLEIK EESIKARNEL EKETRERRNE LSKYERRITS KEESLDKKIE
AVEKRDSSIT KREEELSKAR IKVEELEKQR QQELERISGL TSEQAKEFLL KTVEDEVKHD
TAVMIKTLES RAKEEADKKA REYVVNAIQR CAADHVAETT ISVVQLPNDE MKGRIIGREG
RNIRTLETMT GVELIIDDTP EAVVLSGFDP VRREVARIAL EKLILDGRIH PARIEEMVEK
AQKEVEALIK EEGEAATLEV GVHGIHPELV RLLGKLRYRT SYGQNVLRHS IEVAQLAGLL
AAEMGLDIKT AKRAGLLHDI GKAVDHEMEG SHVQLGVDLC RRYKESPTII NAVEAHHGDV
EPESLIACLV QAADTISAAR PGARRETLET YTNRLKQLED ITNSFKGVEK SFAIQAGREV
RVMVVPEVVS DTDMVLMARD ISKQIEDQME YPGQIKVSII RESRAVDYAK
//
