ID A0A1H6JG58_9FLAO Unreviewed; 344 AA.
AC A0A1H6JG58;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 27-MAR-2024, entry version 17.
DE SubName: Full=Site-specific recombinase XerD {ECO:0000313|EMBL:SEH58705.1};
GN ORFNames=SAMN02927937_00328 {ECO:0000313|EMBL:SEH58705.1};
OS Paenimyroides aquimaris.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Paenimyroides.
OX NCBI_TaxID=1159016 {ECO:0000313|EMBL:SEH58705.1, ECO:0000313|Proteomes:UP000199634};
RN [1] {ECO:0000313|EMBL:SEH58705.1, ECO:0000313|Proteomes:UP000199634}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CGMCC 1.10825 {ECO:0000313|EMBL:SEH58705.1,
RC ECO:0000313|Proteomes:UP000199634};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the 'phage' integrase family.
CC {ECO:0000256|ARBA:ARBA00008857}.
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DR EMBL; FNXE01000003; SEH58705.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1H6JG58; -.
DR STRING; 1159016.SAMN02927937_00328; -.
DR OrthoDB; 9801717at2; -.
DR Proteomes; UP000199634; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 1.10.443.10; Intergrase catalytic core; 1.
DR InterPro; IPR044068; CB.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR013762; Integrase-like_cat_sf.
DR InterPro; IPR002104; Integrase_catalytic.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR InterPro; IPR004107; Integrase_SAM-like_N.
DR PANTHER; PTHR30349:SF86; FELS-2 PROPHAGE PROTEIN; 1.
DR PANTHER; PTHR30349; PHAGE INTEGRASE-RELATED; 1.
DR Pfam; PF13495; Phage_int_SAM_4; 1.
DR Pfam; PF00589; Phage_integrase; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR PROSITE; PS51900; CB; 1.
DR PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE 3: Inferred from homology;
KW DNA integration {ECO:0000256|ARBA:ARBA00022908};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU01248}; Reference proteome {ECO:0000313|Proteomes:UP000199634};
KW Viral genome integration {ECO:0000256|ARBA:ARBA00023195};
KW Virus entry into host cell {ECO:0000256|ARBA:ARBA00023296}.
FT DOMAIN 66..149
FT /note="Core-binding (CB)"
FT /evidence="ECO:0000259|PROSITE:PS51900"
FT DOMAIN 166..339
FT /note="Tyr recombinase"
FT /evidence="ECO:0000259|PROSITE:PS51898"
SQ SEQUENCE 344 AA; 40361 MW; AAEEE9AB7F3B431B CRC64;
MYTAKLITHR GQKRIAVSFE KKKELIARFR KLDGAKWSST LKVWHLPDKE EYRLKFKLPL
EKRLSAETEQ QIENFVKWLR SKRYSESTIK TYVDAIRVFL KFFSEKALYD IENNDIIIFN
NEYILKNKLS ASYQNQMVNA VKLFFQTVQN RKLNIEQIHR PKKPKTLPNV LSKEEIKVIL
EAHGNIKHRA MLSLIYACGL RRSELLNLKP TDIDSKRGIL LIKQAKGKKD RIAPISEKII
ELLRQYYKAY KPTVWLFEGQ QKGEQYTAES LQSVLKQALQ KSNIKKPVSL HWLRHSYATH
LLESGTDLRF IQELLGHNSS KTTEIYTHVS TKSLQNIKSP FDDL
//
