GenomeNet

Database: UniProt
Entry: A0A1I1K1W8_9FLAO
LinkDB: A0A1I1K1W8_9FLAO
Original site: A0A1I1K1W8_9FLAO 
ID   A0A1I1K1W8_9FLAO        Unreviewed;       727 AA.
AC   A0A1I1K1W8;
DT   22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT   22-NOV-2017, sequence version 1.
DT   24-JAN-2024, entry version 21.
DE   RecName: Full=Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};
GN   Name=rnr {ECO:0000256|HAMAP-Rule:MF_01895};
GN   ORFNames=SAMN05216297_101220 {ECO:0000313|EMBL:SFC54929.1};
OS   Flavobacterium phragmitis.
OC   Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Flavobacterium.
OX   NCBI_TaxID=739143 {ECO:0000313|EMBL:SFC54929.1, ECO:0000313|Proteomes:UP000199672};
RN   [1] {ECO:0000313|EMBL:SFC54929.1, ECO:0000313|Proteomes:UP000199672}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CGMCC 1.10370 {ECO:0000313|EMBL:SFC54929.1,
RC   ECO:0000313|Proteomes:UP000199672};
RA   de Groot N.N.;
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC       monophosphates and is involved in maturation of structured RNAs.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=Exonucleolytic cleavage in the 3'- to 5'-direction to yield
CC         nucleoside 5'-phosphates.; EC=3.1.13.1;
CC         Evidence={ECO:0000256|ARBA:ARBA00001849, ECO:0000256|HAMAP-
CC         Rule:MF_01895};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; FOMH01000001; SFC54929.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1I1K1W8; -.
DR   STRING; 739143.SAMN05216297_101220; -.
DR   OrthoDB; 9764149at2; -.
DR   Proteomes; UP000199672; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016070; P:RNA metabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd04471; S1_RNase_R; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 3.
DR   HAMAP; MF_01895; RNase_R; 1.
DR   InterPro; IPR011129; CSD.
DR   InterPro; IPR040476; CSD2.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR013223; RNase_B_OB_dom.
DR   InterPro; IPR001900; RNase_II/R.
DR   InterPro; IPR022966; RNase_II/R_CS.
DR   InterPro; IPR004476; RNase_II/RNase_R.
DR   InterPro; IPR011805; RNase_R.
DR   InterPro; IPR003029; S1_domain.
DR   NCBIfam; TIGR00358; 3_prime_RNase; 1.
DR   NCBIfam; TIGR02063; RNase_R; 1.
DR   PANTHER; PTHR23355:SF9; DIS3-LIKE EXONUCLEASE 2; 1.
DR   PANTHER; PTHR23355; RIBONUCLEASE; 1.
DR   Pfam; PF17876; CSD2; 1.
DR   Pfam; PF08206; OB_RNB; 1.
DR   Pfam; PF00773; RNB; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00357; CSP; 2.
DR   SMART; SM00955; RNB; 1.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR   PROSITE; PS01175; RIBONUCLEASE_II; 1.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895};
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|HAMAP-
KW   Rule:MF_01895};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_01895};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_01895};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01895}.
FT   DOMAIN          642..723
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
SQ   SEQUENCE   727 AA;  83667 MW;  8341DB5D41D8F7A6 CRC64;
     MSKKIRKPIK KEKDFSGKIL KILSQNANKP FNYKQIGAKL ELDDTKSRNQ IIKDLKILAA
     QKKIVETEPG KYLVKAVSQD YYEGTIDMTS RKTAYFICDE FEEDVFIPTN NLNRALDKDK
     VKVYVYNRRK GKRPEGEVIE VIERDKTEFV GVIDMQPNFA FVSTANPKMY TDIFIPKDKI
     GEAENGDVVL VKIEDWPKRA DSPFGSVIRV LGKPGEHNTE IHAILAEYGL PADFPVEVEV
     FAQKLDTSIQ ESEIAKRRDM RDTLTFTIDP KDAKDFDDAL SFKKLENGNF EIGIHIADVS
     YYLEEGTILD DEAYQRATSV YLVDRVVPML PEVLSNFACS LRPNEEKYTF SAIFEVSPTA
     QVINQWFGRT VIYSDQRFAY EEAQHIIETK GDNTIPVDIS ITGESYVVSD EIVEATLKLD
     ELAKILRKKR MQQGAISFDK VEVKFNLNEE GEPEGVYFKI SKDANHLIEE FMLLANRKVA
     EYIGKQKKTF VYRIHDEPNE DKLIAMQTVI AKFGYKIDFR NKGDIAKSLN SLMEEVNGKK
     EQNLIDTLAI RSMSKAKYST DNIGHYGLAF DYYSHFTSPI RRYPDVMVHR LLQYYLDGGA
     SVDEETYETK CLHCSNMENL ATNAERDSIK YMQVKYMQDH QDEEFLGVIS GVTEWGIYVE
     IVSNKCEGMV RIREIKEDYY TFDERQYALV GATSNRLLQL GDEIYVKVKN ADLVKKQLDF
     HFLRRAE
//
DBGET integrated database retrieval system