ID   A0A1I2SGU1_9SPHN        Unreviewed;      3701 AA.
AC   A0A1I2SGU1;
DT   22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT   22-NOV-2017, sequence version 1.
DT   27-MAR-2024, entry version 14.
DE   SubName: Full=YD repeat-containing protein {ECO:0000313|EMBL:SFG52018.1};
GN   ORFNames=SAMN05518801_1402 {ECO:0000313|EMBL:SFG52018.1};
OS   Novosphingobium sp. CF614.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Novosphingobium.
OX   NCBI_TaxID=1884364 {ECO:0000313|EMBL:SFG52018.1, ECO:0000313|Proteomes:UP000199304};
RN   [1] {ECO:0000313|EMBL:SFG52018.1, ECO:0000313|Proteomes:UP000199304}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CF614 {ECO:0000313|EMBL:SFG52018.1,
RC   ECO:0000313|Proteomes:UP000199304};
RA   de Groot N.N.;
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; FOOR01000040; SFG52018.1; -; Genomic_DNA.
DR   STRING; 1884364.SAMN05518801_1402; -.
DR   OrthoDB; 7322641at2; -.
DR   Proteomes; UP000199304; Unassembled WGS sequence.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
DR   CDD; cd00118; LysM; 1.
DR   Gene3D; 3.10.350.10; LysM domain; 1.
DR   Gene3D; 2.180.10.10; RHS repeat-associated core; 8.
DR   InterPro; IPR018392; LysM_dom.
DR   InterPro; IPR036779; LysM_dom_sf.
DR   InterPro; IPR031325; RHS_repeat.
DR   InterPro; IPR006530; YD.
DR   NCBIfam; TIGR01643; YD_repeat_2x; 7.
DR   PANTHER; PTHR32305; -; 1.
DR   PANTHER; PTHR32305:SF15; PROTEIN RHSA-RELATED; 1.
DR   Pfam; PF01476; LysM; 1.
DR   Pfam; PF05593; RHS_repeat; 6.
DR   SMART; SM00257; LysM; 1.
DR   PROSITE; PS51782; LYSM; 1.
PE   4: Predicted;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000199304};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        3145..3171
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        3183..3208
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          3057..3104
FT                   /note="LysM"
FT                   /evidence="ECO:0000259|PROSITE:PS51782"
SQ   SEQUENCE   3701 AA;  393136 MW;  FCF5CF0F54C60659 CRC64;
     MVSVVTGSGL GLDQASGFVL GSRGQLGSSA FGRYGEGVTV NAATGNLFVN RTDEILIGLG
     VDAVVSRSYN SLGLSNDENG DNWQLGGQRR VAGLTGTVNT AGSTVTRYDW DGSSIAYTWD
     ASKAAYVSAK VGHQDDRITF ASNVWTWTDS DSRTSETYDH LNGGRLIAVK DADNNTTSYS
     YTGSLLTRIA TANGEYTDLT WSGSNLTQVV TTKSSGTPLT RVRYTYDDEN RLWSVTTDLT
     PDDNSVADGK TVVTTYTYDG TSDRVASISQ TGGAKLDFTY ALVGADYRVA TYKQTLASGV
     TSQVTLSYDT TNRVTTLTDQ SGQVTKLTYD TSSRLTKVEL PPAQAGATAQ VTTYTYDSAG
     NVLTMKDALN NTTAYQYDAN GNLTLIRDAA ANTVTYTYGA GNELLTETRY TVADPDGSGP
     GLPSGSATTR YVYDTAYHLL FTITAEGGVT QNAYFNSSAS NGLLRFQWAY TGQVYDTSGL
     TDIQAPSAAD LNTWISAITD KSTRLRTEYT YDFRGNLATA MSWGASTSAG AGSGVATTVT
     YTYDQYGNLL TRQTSGIANT EVFTYDGLGR MTGSVDLDGG TTSLVFTDGQ NRQVVTLANG
     LVQTSTYNMA GQLISYQTSG TGLTTATASY KYDTLGRQRI AVDALSNKSY ALYDATGRKV
     AAIAADGAIT EYFYDAGNRL VATLSYATRV AADRLALLVD ANGNPTDVSL GAIRPNQAAG
     DAWEWRVYDK ADRLLEVIDG QGGVSRFGYD GMSNLVRTVQ YRNVLSSSTL AGLKERFSNR
     LYNPQFNGAG GWTTGTDAAG IINNGSPFTA VWTGKSLIRS DFTATDAGQL ASIFSGWDHL
     FNATAGEQLV VQAGVEGVGP VASLELVIWW TDANGATIGQ SLIGQLAGAQ SFNTKVGSTV
     TVPTGAVAGR LELYMTTSAA GSGWISLAEP VVLPANSQST LTVVAPGAFA TKDEISRNFY
     DKSGRLVGAL DGLGYLSQVV YDAGGRAVHT VAYANLTDAT LRAAGTFADL LASVGTNTRD
     IHQYSIYYND GKLRYTLDAN LRPTEYAYDA AGNLIHTIDY GASIGTGTDY SASYVAGQIS
     SLGLSSNANT RKSWSVYDNA GRLAYAINAE GGVSRFSYDS LGQITKTVQF ALIRTTTSDP
     TLATMDAWAS TNGIAGDRVT RSYYDRRGLR YVVDAEGFLT RNDYDLDGKL TRTFRWDTAY
     AADDTTTIDT INAANKGTWL DTQYAYDPLG RLSTTTDALG IVTKFIYDAL DRVTDRTVAY
     GAVNGGGTSA AVTTHYVYDA AGRVTDETAA WGTADATTTH YTYDGFGHVL TRVSAYGAAE
     ASTTVFTYDA LGNVLTQVAA SGTSVEATTS FAYDAFGNVI ATTDARGNVS YSTYDLLNRL
     VWQVDAEGYV TQTSYTIGDE VASITRYHAR ATVSGPAVVP TVAATSGEDA TTTFTRDKLG
     RVTKVTDAMG AYEQYTLDAF GNRLTVKNKL GGTTTNTFDR RGLLLTETLP ISSIDNEGNV
     AAASVTNSYA YDSRGNRTQM VEAVGLSEQR TTTYTYDKMD RLTKTTGMAV GYASDTSLGA
     TGSTPLYDQV TYDKRGNVIE SKNAAGNRTL FYYDGLNRKI AEISPVGTLS TWTYDDNGNA
     ISARVYGDAV SLPGTAGGTA PAPVNASNYR ETTFTYDRAN RLLTSTVVSV QIGYWNGSSY
     VTSTPSLTVT NQYDKAGNVI KQTDARGYSV YFFYDKLGRK VGQADKENYF TAYTLDADGN
     VTQETRYAIP VTSTITAGGN PPAINLIPNG DFSQGLTGWT IGYDPNNILK AGSPYTITNV
     NGTGTNCIKA EFNATAAGQT ISLATTTNVP VVAGDRLAVQ MGIEGQGAGI IGTQTVAVWF
     FDANGNTIPN TGGGIASLNG PLSYNTKLGG FVDVPQGAAS MRLELYMDSA GAGQGTFLID
     QPMVASVPRG QTQLPSFSAN AGGVAGLAGA RTTQFTYDRN GRRLTEKRLN VTAWTIDGST
     GLLTAASTTA TVTYTYNGLG EVTKKTEATG EYTDYFYDTM GRQTSIRSSA FTDYTATSVK
     RQTEMTYDGL GNLTSTSERG VLASDNVTSS GQSARVTTYS YDAAGRLVST YVAGGATHFY
     EYDIAGRLIR DRYLRANSAG TTTWEASDTR YDAAGRVIKQ AVRSWNGSSW TTPAVETRIA
     YNTYGEVTGQ GTNAGSAGAS VYQETFSYDA AGRIWRSTAG DGVVKLYLYD QNGNQSAVIT
     SDGDALPSGY SWSTLTIQQA ITLFTNSGAS TIGNVSVQGM VVTLQAYDKR GSLTQTREPQ
     RDVSATGTTA PASTLINHQK VYNAFGEVVQ EINARGYVSD YTYNTMGKVI QRQMPTVSWT
     AENGAQANAR PTENYYYDLS GRVVGVQDAN GNLNTKSLLA GTGYGGSEAL TLTEFHADTG
     KFYNKYDIFN DLRTTVNEVG KSESYNYDNR GLLVSQVHQQ RADGTQLIDF YSYDALGHRL
     THYNSQLGST VKDITDYDAL GRIISMIDMG GNNTSYEYAW DQNQATTGLG TFGATIKTTT
     NAAGKYEVVW TDYFGRTVDK WDYGRHDYNY TYNIAGQLAN TTNAAGLSTT YTYYNTGLIA
     SISTGTDNGY SSSTATSTFR YNAEGNRTLE THAVTGYYYD YYDGIAYDYT TSYENATATY
     DALNRITAIT DTGTGSAAPI TIAYEYDLVG NIRHMNASFR FMDTQGVISS ASSTQDYWYK
     YDAMNRFVTT KGVFTGTRGS GSITRGTAGG LGITYDLAGN RATSIWTERA SYTILIDEST
     GKTKTMYKNL DHSDQYIYET DGYLKQVNSS VDAMDIDGIV TQGTMTKRAA YTRDAMGRVT
     DYKEYASNGT SVVYERSNTY NTKSQVTSDI VTSVRSDGTW VSNSTYYYNA SETSSGSGEW
     TGVTSGGTYM GGVVTKVATS VTKNGAAQTG NTTTYSYRWW DNALQSKTNY VSGSTSNTST
     FYYSNGGVLN SVYIQDGRPR TVSFINNADG FVMSRDENDN KSTGDPRELH YYYNGHGIGD
     VSNNGTSDVD YVTSIAQHTA VGATGPFHNG ATTSTNYADF DQSYDPINGL NYESTSSRYT
     VHDGDSLETI AQNLWGDASF WYLIADANGL NGSEILVAGQ NLIIPNKVHN SHNTSDTYRV
     YDPNEAIGDT SPTAAKPPKK NKCGVFGQIL LVAIAVAVTV VTSGAAAAAA ANVSGGVFGG
     LGALASAGTA GGMTLGTAVA IGAGAAALGS VVSQGFGVAT GIQDSFSWKG VALSALAGGI
     GTGLGGVNLF GTQGIGAVGS AAFRGVLGNA LTQGIGVATG LQNSFSWSGV AAAGVGAGVG
     NAIGGHTALG RAGSGMAGGI AGAAATSLVT GRDFGDTIMS QLPSIIGNTI GNLVADRVAG
     KPETMAERLQ RQGYKLLGQF ADSGAIRSDA PSPEQQAWAE QAADEIVVTG HKMNWLEKLA
     YDVGHLFSGG SVRQTAPSSD RGTRFYWNYQ AARQYHQQEA SQPGNRPTVS DQQIWNNAYR
     QAGSQVNREF GGRAAFGPVS AATAIAAPVV LGNSLLAQGG TAFLTSANGG VATRYAMGQD
     ISLETYALDG AVGTATFGVF KGVGAGGSAI ASRFAAPIEE SVPSRLIGSY LPSANLKFGS
     TLFGDEAHTV AGRMLTENLN AQGVPLEAIT NRTGPGLTGI DMSVDPIYAK QLGFEHIEIK
     PNTANGLRTL NRQVERWGMN PSSVQSVTYD AQGNVWWGFD F
//