ID A0A1I2TK85_9BACT Unreviewed; 480 AA.
AC A0A1I2TK85;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SFG62896.1};
GN ORFNames=SAMN05421739_10386 {ECO:0000313|EMBL:SFG62896.1};
OS Pontibacter chinhatensis.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae;
OC Pontibacter.
OX NCBI_TaxID=1436961 {ECO:0000313|EMBL:SFG62896.1, ECO:0000313|Proteomes:UP000198724};
RN [1] {ECO:0000313|EMBL:SFG62896.1, ECO:0000313|Proteomes:UP000198724}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LP51 {ECO:0000313|EMBL:SFG62896.1,
RC ECO:0000313|Proteomes:UP000198724};
RA de Groot N.N.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; FOOT01000003; SFG62896.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1I2TK85; -.
DR STRING; 1436961.SAMN05421739_10386; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000198724; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 108..298
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 321..478
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 41..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..67
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 480 AA; 55156 MW; 5DE632E05D3A4009 CRC64;
MQRLDLRQLL SQKLSPQQIQ FIKLLQIPTA ELEMRIKEEL EVNPALEEGR EEPAEEYSDS
SDDYEEDYGK DDEIDLNDYL NDDEISGYKM QGDRGGDDEE DREMPIAMAT TLTDSLLDQL
GFLDLDDKQY SIGMQLIGSI DNDGYIRREL SSIANDLAFS QNIDTTQEEI EQVLHLIQTF
DPAGIAARDL PECLLLQLER REQDATTVLA ERIIRQTFDE FTKKHYQKIQ SKFNVSEEEL
KKAIDVITRL NPKPGGAGAG IARVQYIIPD FILTNNNGQL ELSLNSRNAP DLRISRSYAD
MFDAYDKSDK KDKKLKETVA FVKQKLDAAK WFIDAIRQRQ NTLLRTMEAI IKYQHDFFLE
GDESMLRPMI LKDIAEEIGM DISTVSRVAN SKAVQTEFGI YPLKYFFSEG IATDSGEDAS
SREVKHILKE IIDNENKRKP LSDEKIEKLL NEKGYNIARR TVAKYREQLN IPVARLRKEL
//
